Analysis of interatomic Contacts of Structural Units in PDB entry:
4M85


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4M85 entry

There are 4 chains in PDB entry 4M85 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -2VAL 182
B
 ASN -1VAL 182
C
 ALA 0VAL 182
D
 ALA 0VAL 182
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 4M85. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 8Right-handed 310
Helix 2
2
A
9 24Right-handed alpha
Helix 3
3
A
26 32Right-handed alpha
Helix 4
4
A
33 47Right-handed alpha
Helix 5
5
A
53 55Right-handed 310
Helix 6
6
A
77 84Right-handed alpha
Helix 7
7
A
85 88Right-handed 310
Helix 8
8
A
91 96Right-handed alpha
Helix 9
9
A
120 123Right-handed 310
Helix 10
10
A
126 138Right-handed alpha
Helix 11
11
A
152 162Right-handed alpha
Helix 12
12
B
6 8Right-handed 310
Helix 13
13
B
9 25Right-handed alpha
Helix 14
14
B
26 32Right-handed alpha
Helix 15
15
B
33 47Right-handed alpha
Helix 16
16
B
53 55Right-handed 310
Helix 17
17
B
77 84Right-handed alpha
Helix 18
18
B
85 88Right-handed 310
Helix 19
19
B
91 96Right-handed alpha
Helix 20
20
B
120 123Right-handed 310
Helix 21
21
B
126 139Right-handed alpha
Helix 22
22
B
152 162Right-handed alpha
Helix 23
23
C
6 8Right-handed 310
Helix 24
24
C
9 25Right-handed alpha
Helix 25
25
C
26 32Right-handed alpha
Helix 26
26
C
33 47Right-handed alpha
Helix 27
27
C
53 55Right-handed 310
Helix 28
28
C
77 84Right-handed alpha
Helix 29
29
C
85 88Right-handed 310
Helix 30
30
C
91 96Right-handed alpha
Helix 31
31
C
120 123Right-handed 310
Helix 32
32
C
126 139Right-handed alpha
Helix 33
33
C
152 163Right-handed alpha
Helix 34
34
D
6 8Right-handed 310
Helix 35
35
D
9 25Right-handed alpha
Helix 36
36
D
26 32Right-handed alpha
Helix 37
37
D
33 47Right-handed alpha
Helix 38
38
D
53 55Right-handed 310
Helix 39
39
D
77 84Right-handed alpha
Helix 40
40
D
85 88Right-handed 310
Helix 41
41
D
91 96Right-handed alpha
Helix 42
42
D
120 123Right-handed 310
Helix 43
43
D
126 139Right-handed alpha
Helix 44
44
D
152 162Right-handed alpha
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There are 4 sheets in PDB entry 4M85. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1 4first strand
Strand 2
A
57 62anti-parallel
Strand 3
A
65 74anti-parallel
Strand 4
A
111 118anti-parallel
Strand 5
A
144 149parallel
Strand 6
A
175 182anti-parallel
Strand 7
A
165 172anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
0 4first strand
Strand 2
B
57 62anti-parallel
Strand 3
B
65 74anti-parallel
Strand 4
B
111 118anti-parallel
Strand 5
B
144 149parallel
Strand 6
B
175 182anti-parallel
Strand 7
B
165 172anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1 4first strand
Strand 2
C
57 61anti-parallel
Strand 3
C
66 74anti-parallel
Strand 4
C
111 118anti-parallel
Strand 5
C
144 149parallel
Strand 6
C
175 182anti-parallel
Strand 7
C
165 172anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
1 4first strand
Strand 2
D
57 62anti-parallel
Strand 3
D
65 74anti-parallel
Strand 4
D
111 118anti-parallel
Strand 5
D
144 149parallel
Strand 6
D
175 182anti-parallel
Strand 7
D
165 172anti-parallel
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