Analysis of interatomic Contacts of Structural Units in PDB entry:
4M88


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4M88 entry

There is 1 chain in PDB entry 4M88 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 0TYR 354
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 4M88. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 35Right-handed alpha
Helix 2
2
A
53 66Right-handed alpha
Helix 3
3
A
77 87Right-handed alpha
Helix 4
4
A
104 109Right-handed alpha
Helix 5
5
A
121 136Right-handed alpha
Helix 6
6
A
148 164Right-handed alpha
Helix 7
7
A
180 193Right-handed alpha
Helix 8
8
A
204 218Right-handed alpha
Helix 9
9
A
231 245Right-handed alpha
Helix 10
10
A
261 275Right-handed alpha
Helix 11
11
A
282 301Right-handed alpha
Helix 12
12
A
308 319Right-handed alpha
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There are 3 sheets in PDB entry 4M88. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 49first strand
Strand 2
A
1 8parallel
Strand 3
A
71 73parallel
Strand 4
A
96 98parallel
Strand 5
A
115 116parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 177first strand
Strand 2
A
140 146parallel
Strand 3
A
198 202parallel
Strand 4
A
224 226parallel
Strand 5
A
247 251parallel
Strand 6
A
342 346anti-parallel
Strand 7
A
352 353anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
322 324first strand
Strand 2
A
327 329anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il