Analysis of interatomic Contacts of Structural Units in PDB entry:
4M8K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4M8K entry

There are 2 chains in PDB entry 4M8K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU -6ILE 228
B
 ASN -5ILE 228
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 4M8K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
-5 -1Right-handed 310
Helix 2
2
A
32 35Right-handed 310
Helix 3
3
A
62 65Right-handed 310
Helix 4
4
A
66 75Right-handed alpha
Helix 5
5
A
94 98Right-handed 310
Helix 6
6
A
104 108Right-handed 310
Helix 7
7
A
123 130Right-handed alpha
Helix 8
8
A
144 147Right-handed 310
Helix 9
9
A
148 164Right-handed alpha
Helix 10
10
A
178 193Right-handed alpha
Helix 11
11
A
210 226Right-handed alpha
Helix 12
12
B
-5 -1Right-handed 310
Helix 13
13
B
32 35Right-handed 310
Helix 14
14
B
62 65Right-handed 310
Helix 15
15
B
66 75Right-handed alpha
Helix 16
16
B
94 98Right-handed 310
Helix 17
17
B
104 108Right-handed 310
Helix 18
18
B
123 130Right-handed alpha
Helix 19
19
B
144 147Right-handed 310
Helix 20
20
B
148 164Right-handed alpha
Helix 21
21
B
178 193Right-handed alpha
Helix 22
22
B
210 226Right-handed alpha
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There are 4 sheets in PDB entry 4M8K. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 84first strand
Strand 2
A
25 30parallel
Strand 3
A
117 121parallel
Strand 4
A
168 173parallel
Strand 5
A
195 198parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 205first strand
Strand 2
A
208 209anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
78 84first strand
Strand 2
B
25 30parallel
Strand 3
B
117 121parallel
Strand 4
B
168 173parallel
Strand 5
B
195 198parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
204 205first strand
Strand 2
B
208 209anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il