Analysis of interatomic Contacts of Structural Units in PDB entry:
4M8L

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4M8L entry

There are 4 chains in PDB entry 4M8L (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 5	LEU 224
B	ASN 8	LEU 224
C	ASN 8	LEU 224
D	ASN 7	LEU 224

There are 36 helices in PDB entry 4M8L. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	5	22	Right-handed alpha
Helix 2	2	A	35	45	Right-handed alpha
Helix 3	3	A	46	49	Right-handed 310
Helix 4	4	A	59	69	Right-handed alpha
Helix 5	5	A	75	80	Right-handed alpha
Helix 6	6	A	105	115	Right-handed alpha
Helix 7	7	A	126	128	Right-handed 310
Helix 8	8	A	145	156	Right-handed alpha
Helix 9	9	A	184	194	Right-handed alpha
Helix 10	10	B	9	22	Right-handed alpha
Helix 11	11	B	35	45	Right-handed alpha
Helix 12	12	B	46	49	Right-handed 310
Helix 13	13	B	59	69	Right-handed alpha
Helix 14	14	B	75	80	Right-handed alpha
Helix 15	15	B	105	115	Right-handed alpha
Helix 16	16	B	126	128	Right-handed 310
Helix 17	17	B	145	156	Right-handed alpha
Helix 18	18	B	184	194	Right-handed alpha
Helix 19	19	C	9	22	Right-handed alpha
Helix 20	20	C	35	45	Right-handed alpha
Helix 21	21	C	46	49	Right-handed 310
Helix 22	22	C	59	69	Right-handed alpha
Helix 23	23	C	75	80	Right-handed alpha
Helix 24	24	C	105	115	Right-handed alpha
Helix 25	25	C	126	128	Right-handed 310
Helix 26	26	C	145	156	Right-handed alpha
Helix 27	27	C	184	194	Right-handed alpha
Helix 28	28	D	8	22	Right-handed alpha
Helix 29	29	D	35	45	Right-handed alpha
Helix 30	30	D	46	49	Right-handed 310
Helix 31	31	D	59	69	Right-handed alpha
Helix 32	32	D	75	80	Right-handed alpha
Helix 33	33	D	105	115	Right-handed alpha
Helix 34	34	D	126	128	Right-handed 310
Helix 35	35	D	145	156	Right-handed alpha
Helix 36	36	D	184	194	Right-handed alpha

There are 12 sheets in PDB entry 4M8L. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	57	first strand
Strand 2	A	28	32	parallel
Strand 3	A	82	87	parallel
Strand 4	A	116	124	parallel
Strand 5	A	211	215	parallel
Strand 6	A	221	224	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	91	92	first strand
Strand 2	A	98	99	anti-parallel
Strand 3	A	203	204	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	159	162	first strand
Strand 2	A	173	178	anti-parallel
Strand 3	A	137	141	anti-parallel
Strand 4	A	198	201	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	57	first strand
Strand 2	B	28	32	parallel
Strand 3	B	82	87	parallel
Strand 4	B	116	124	parallel
Strand 5	B	211	215	parallel
Strand 6	B	221	224	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	91	92	first strand
Strand 2	B	98	99	anti-parallel
Strand 3	B	203	204	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	159	162	first strand
Strand 2	B	173	178	anti-parallel
Strand 3	B	137	141	anti-parallel
Strand 4	B	198	201	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	57	first strand
Strand 2	C	28	32	parallel
Strand 3	C	82	87	parallel
Strand 4	C	116	124	parallel
Strand 5	C	211	215	parallel
Strand 6	C	221	224	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	91	92	first strand
Strand 2	C	98	99	anti-parallel
Strand 3	C	203	204	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	159	162	first strand
Strand 2	C	173	178	anti-parallel
Strand 3	C	137	141	anti-parallel
Strand 4	C	198	201	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	52	57	first strand
Strand 2	D	28	32	parallel
Strand 3	D	82	87	parallel
Strand 4	D	116	124	parallel
Strand 5	D	211	215	parallel
Strand 6	D	221	224	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	91	92	first strand
Strand 2	D	98	99	anti-parallel
Strand 3	D	203	204	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	159	162	first strand
Strand 2	D	173	178	anti-parallel
Strand 3	D	137	141	anti-parallel
Strand 4	D	198	201	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4M8L

Analysis of interatomic Contacts of Structural Units in PDB entry:
4M8L