Analysis of interatomic Contacts of Structural Units in PDB entry:
4M8M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4M8M entry

There are 2 chains in PDB entry 4M8M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 529ASP 1145
B
 LYS 531ASP 1145
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 4M8M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
530 585Right-handed alpha
Helix 2
2
A
600 610Right-handed alpha
Helix 3
3
A
616 622Right-handed alpha
Helix 4
4
A
634 645Right-handed alpha
Helix 5
5
A
646 659Right-handed alpha
Helix 6
6
A
664 679Right-handed alpha
Helix 7
7
A
682 702Right-handed alpha
Helix 8
8
A
705 709Right-handed 310
Helix 9
9
A
715 737Right-handed alpha
Helix 10
10
A
737 754Right-handed alpha
Helix 11
11
A
769 773Right-handed 310
Helix 12
12
A
810 827Right-handed alpha
Helix 13
13
A
931 933Right-handed 310
Helix 14
14
A
934 957Right-handed alpha
Helix 15
15
A
959 963Right-handed 310
Helix 16
16
A
965 982Right-handed alpha
Helix 17
17
A
986 998Right-handed alpha
Helix 18
18
A
1002 1008Right-handed alpha
Helix 19
19
A
1009 1013Right-handed 310
Helix 20
20
A
1020 1038Right-handed alpha
Helix 21
21
A
1050 1057Right-handed alpha
Helix 22
22
A
1059 1077Right-handed alpha
Helix 23
23
A
1081 1096Right-handed alpha
Helix 24
24
A
1101 1116Right-handed alpha
Helix 25
25
A
1116 1126Right-handed alpha
Helix 26
26
A
1130 1145Right-handed alpha
Helix 27
27
B
532 585Right-handed alpha
Helix 28
28
B
600 610Right-handed alpha
Helix 29
29
B
616 622Right-handed alpha
Helix 30
30
B
634 645Right-handed alpha
Helix 31
31
B
646 658Right-handed alpha
Helix 32
32
B
664 679Right-handed alpha
Helix 33
33
B
682 700Right-handed alpha
Helix 34
34
B
701 709Right-handed 310
Helix 35
35
B
715 737Right-handed alpha
Helix 36
36
B
737 753Right-handed alpha
Helix 37
37
B
769 773Right-handed 310
Helix 38
38
B
810 826Right-handed alpha
Helix 39
39
B
931 933Right-handed 310
Helix 40
40
B
934 957Right-handed alpha
Helix 41
41
B
959 963Right-handed 310
Helix 42
42
B
965 982Right-handed alpha
Helix 43
43
B
986 998Right-handed alpha
Helix 44
44
B
1002 1008Right-handed alpha
Helix 45
45
B
1009 1013Right-handed 310
Helix 46
46
B
1020 1037Right-handed alpha
Helix 47
47
B
1050 1056Right-handed alpha
Helix 48
48
B
1059 1077Right-handed alpha
Helix 49
49
B
1081 1096Right-handed alpha
Helix 50
50
B
1101 1116Right-handed alpha
Helix 51
51
B
1116 1126Right-handed alpha
Helix 52
52
B
1130 1145Right-handed alpha
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There are 4 sheets in PDB entry 4M8M. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
800 806first strand
Strand 2
A
782 789anti-parallel
Strand 3
A
879 884parallel
Strand 4
A
837 841anti-parallel
Strand 5
A
848 849anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
859 860first strand
Strand 2
A
863 865anti-parallel
Strand 3
A
907 908parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
800 806first strand
Strand 2
B
782 789anti-parallel
Strand 3
B
879 884parallel
Strand 4
B
837 841anti-parallel
Strand 5
B
848 849anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
859 860first strand
Strand 2
B
863 865anti-parallel
Strand 3
B
907 908parallel
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