Analysis of interatomic Contacts of Structural Units in PDB entry:
4M8U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4M8U entry

There is 1 chain in PDB entry 4M8U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2ILE 561
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 4M8U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 8Right-handed alpha
Helix 2
2
A
14 18Right-handed 310
Helix 3
3
A
28 43Right-handed alpha
Helix 4
4
A
76 90Right-handed alpha
Helix 5
5
A
107 114Right-handed alpha
Helix 6
6
A
121 125Right-handed 310
Helix 7
7
A
174 191Right-handed alpha
Helix 8
8
A
200 204Right-handed 310
Helix 9
9
A
224 228Right-handed 310
Helix 10
10
A
232 244Right-handed alpha
Helix 11
11
A
245 248Right-handed 310
Helix 12
12
A
260 269Right-handed alpha
Helix 13
13
A
270 273Right-handed 310
Helix 14
14
A
281 285Right-handed 310
Helix 15
15
A
294 298Right-handed 310
Helix 16
16
A
303 318Right-handed alpha
Helix 17
17
A
335 341Right-handed alpha
Helix 18
18
A
346 360Right-handed alpha
Helix 19
19
A
370 374Right-handed 310
Helix 20
20
A
381 385Right-handed 310
Helix 21
21
A
387 398Right-handed alpha
Helix 22
22
A
405 417Right-handed alpha
Helix 23
23
A
418 422Right-handed 310
Helix 24
24
A
430 435Right-handed 310
Helix 25
25
A
452 459Right-handed alpha
Helix 26
26
A
462 477Right-handed alpha
Helix 27
27
A
478 483Right-handed alpha
Helix 28
28
A
523 527Right-handed 310
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There are 5 sheets in PDB entry 4M8U. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
277 279first strand
Strand 2
A
251 255parallel
Strand 3
A
195 198parallel
Strand 4
A
93 98parallel
Strand 5
A
46 49parallel
Strand 6
A
10 13parallel
Strand 7
A
364 368parallel
Strand 8
A
325 326parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 54first strand
Strand 2
A
66 70anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 128first strand
Strand 2
A
157 160anti-parallel
Strand 3
A
149 152anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
486 488first strand
Strand 2
A
495 502anti-parallel
Strand 3
A
505 512anti-parallel
Strand 4
A
555 560anti-parallel
Strand 5
A
531 536anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
518 521first strand
Strand 2
A
547 550anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il