Analysis of interatomic Contacts of Structural Units in PDB entry:
4M98


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4M98 entry

There is 1 chain in PDB entry 4M98 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 199LEU 403
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 3 helices in PDB entry 4M98. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
208 222Right-handed alpha
Helix 2
2
A
247 253Right-handed alpha
Helix 3
3
A
267 281Right-handed alpha
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There are 4 sheets in PDB entry 4M98. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 238first strand
Strand 2
A
241 245anti-parallel
Strand 3
A
226 230parallel
Strand 4
A
201 205parallel
Strand 5
A
259 263parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
288 289first strand
Strand 2
A
306 307parallel
Strand 3
A
324 325parallel
Strand 4
A
342 343parallel
Strand 5
A
360 361parallel
Strand 6
A
378 379parallel
Strand 7
A
394 396parallel
Strand 8
A
401 402anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
294 295first strand
Strand 2
A
312 313parallel
Strand 3
A
330 331parallel
Strand 4
A
348 349parallel
Strand 5
A
366 367parallel
Strand 6
A
384 385parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
300 301first strand
Strand 2
A
318 319parallel
Strand 3
A
336 337parallel
Strand 4
A
354 355parallel
Strand 5
A
372 373parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il