Analysis of interatomic Contacts of Structural Units in PDB entry:
4M9F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4M9F entry

There is 1 chain in PDB entry 4M9F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 43SER 1171
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 3 helices in PDB entry 4M9F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
62 69Right-handed alpha
Helix 2
2
A
1050 1054Right-handed alpha
Helix 3
3
A
1131 1135Right-handed 310
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There are 4 sheets in PDB entry 4M9F. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 57first strand
Strand 2
A
1021 1029anti-parallel
Strand 3
A
1032 1042anti-parallel
Strand 4
A
1045 1049anti-parallel
Strand 5
A
1076 1079anti-parallel
Strand 6
A
1067 1071anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 72first strand
Strand 2
A
1107 1111anti-parallel
Strand 3
A
1095 1099anti-parallel
Strand 4
A
1138 1140anti-parallel
Strand 5
A
1146 1149anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1058 1060first strand
Strand 2
A
1063 1065anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1114 1117first strand
Strand 2
A
1122 1126anti-parallel
Strand 3
A
1161 1164anti-parallel
Strand 4
A
1153 1155anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il