Analysis of interatomic Contacts of Structural Units in PDB entry:
4M9P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4M9P entry

There is 1 chain in PDB entry 4M9P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 478GLY 766
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 4M9P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
479 483Right-handed 310
Helix 2
2
A
487 491Right-handed 310
Helix 3
3
A
583 586Right-handed 310
Helix 4
4
A
671 675Right-handed 310
Helix 5
5
A
679 683Right-handed 310
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There are 9 sheets in PDB entry 4M9P. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
484 486first strand
Strand 2
A
501 506anti-parallel
Strand 3
A
537 542anti-parallel
Strand 4
A
529 534anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
524 525first strand
Strand 2
A
515 521anti-parallel
Strand 3
A
548 556anti-parallel
Strand 4
A
559 560anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
524 525first strand
Strand 2
A
515 521anti-parallel
Strand 3
A
548 556anti-parallel
Strand 4
A
566 570anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
579 582first strand
Strand 2
A
595 601anti-parallel
Strand 3
A
630 636anti-parallel
Strand 4
A
620 625anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
588 590first strand
Strand 2
A
659 664parallel
Strand 3
A
641 649anti-parallel
Strand 4
A
609 614anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
588 590first strand
Strand 2
A
659 664parallel
Strand 3
A
641 649anti-parallel
Strand 4
A
652 653anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
676 678first strand
Strand 2
A
693 698anti-parallel
Strand 3
A
730 735anti-parallel
Strand 4
A
721 725anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
707 712first strand
Strand 2
A
742 749anti-parallel
Strand 3
A
752 753anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
707 712first strand
Strand 2
A
742 749anti-parallel
Strand 3
A
759 762anti-parallel
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