Analysis of interatomic Contacts of Structural Units in PDB entry:
4M9V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4M9V entry

There are 10 chains in PDB entry 4M9V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 T 1 C 6
A
 G 8 G 11
B
 A 1 G 4
B
 G 6 T 11
C
 GLY 132PRO 194
D
 T 1 C 6
D
 G 8 G 11
E
 A 1 G 4
E
 G 6 T 11
F
 GLY 132PRO 194
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 4M9V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
C
151 164Right-handed alpha
Helix 2
2
C
179 187Right-handed alpha
Helix 3
3
C
188 191Right-handed 310
Helix 4
4
F
151 164Right-handed alpha
Helix 5
5
F
179 187Right-handed alpha
Helix 6
6
F
188 191Right-handed 310
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There are 4 sheets in PDB entry 4M9V. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
140 141first strand
Strand 2
C
148 149anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
168 169first strand
Strand 2
C
176 177anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
140 141first strand
Strand 2
F
148 149anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
168 169first strand
Strand 2
F
176 177anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il