Analysis of interatomic Contacts of Structural Units in PDB entry:
4MB0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4MB0 entry

There are 4 chains in PDB entry 4MB0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 9ASP 261
B
 VAL 2LYS 258
C
 PRO 9ASP 261
D
 ARG 10ASP 261
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 4MB0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 26Right-handed alpha
Helix 2
2
A
30 48Right-handed alpha
Helix 3
3
A
52 69Right-handed alpha
Helix 4
4
A
77 84Right-handed alpha
Helix 5
5
A
84 96Right-handed alpha
Helix 6
6
A
107 120Right-handed alpha
Helix 7
7
A
163 173Right-handed alpha
Helix 8
8
A
186 192Right-handed alpha
Helix 9
9
A
199 215Right-handed alpha
Helix 10
10
A
218 229Right-handed alpha
Helix 11
11
A
230 253Right-handed alpha
Helix 12
12
B
10 26Right-handed alpha
Helix 13
13
B
30 48Right-handed alpha
Helix 14
14
B
52 69Right-handed alpha
Helix 15
15
B
77 84Right-handed alpha
Helix 16
16
B
84 96Right-handed alpha
Helix 17
17
B
107 120Right-handed alpha
Helix 18
18
B
163 174Right-handed alpha
Helix 19
19
B
186 192Right-handed alpha
Helix 20
20
B
199 215Right-handed alpha
Helix 21
21
B
218 228Right-handed alpha
Helix 22
22
B
230 250Right-handed alpha
Helix 23
23
C
10 26Right-handed alpha
Helix 24
24
C
30 48Right-handed alpha
Helix 25
25
C
52 69Right-handed alpha
Helix 26
26
C
77 84Right-handed alpha
Helix 27
27
C
84 95Right-handed alpha
Helix 28
28
C
107 120Right-handed alpha
Helix 29
29
C
163 173Right-handed alpha
Helix 30
30
C
186 192Right-handed alpha
Helix 31
31
C
199 215Right-handed alpha
Helix 32
32
C
218 229Right-handed alpha
Helix 33
33
C
230 253Right-handed alpha
Helix 34
34
D
11 26Right-handed alpha
Helix 35
35
D
30 48Right-handed alpha
Helix 36
36
D
52 69Right-handed alpha
Helix 37
37
D
77 84Right-handed alpha
Helix 38
38
D
84 95Right-handed alpha
Helix 39
39
D
107 122Right-handed alpha
Helix 40
40
D
163 173Right-handed alpha
Helix 41
41
D
186 192Right-handed alpha
Helix 42
42
D
199 215Right-handed alpha
Helix 43
43
D
218 229Right-handed alpha
Helix 44
44
D
230 251Right-handed alpha
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There are 7 sheets in PDB entry 4MB0. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 101first strand
Strand 2
A
73 76parallel
Strand 3
A
156 158parallel
Strand 4
A
176 180parallel
Strand 5
A
194 196parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 135first strand
Strand 2
A
145 146anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
127 128first strand
Strand 2
B
98 101parallel
Strand 3
B
73 76parallel
Strand 4
B
156 160parallel
Strand 5
B
176 180parallel
Strand 6
B
194 196parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
127 128first strand
Strand 2
C
98 101parallel
Strand 3
C
72 76parallel
Strand 4
C
156 158parallel
Strand 5
C
176 180parallel
Strand 6
C
194 196parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
134 135first strand
Strand 2
C
145 146anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
127 128first strand
Strand 2
D
98 101parallel
Strand 3
D
72 76parallel
Strand 4
D
156 160parallel
Strand 5
D
176 180parallel
Strand 6
D
194 196parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
134 135first strand
Strand 2
D
145 146anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il