Analysis of interatomic Contacts of Structural Units in PDB entry:
4MB5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4MB5 entry

There is 1 chain in PDB entry 4MB5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 23ARG 550
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 4MB5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
55 59Right-handed 310
Helix 2
2
A
75 79Right-handed 310
Helix 3
3
A
87 91Right-handed 310
Helix 4
4
A
93 107Right-handed alpha
Helix 5
5
A
128 144Right-handed alpha
Helix 6
6
A
153 158Right-handed 310
Helix 7
7
A
161 179Right-handed alpha
Helix 8
8
A
191 196Right-handed 310
Helix 9
9
A
201 208Right-handed alpha
Helix 10
10
A
239 241Right-handed 310
Helix 11
11
A
242 257Right-handed alpha
Helix 12
12
A
265 268Right-handed 310
Helix 13
13
A
287 301Right-handed alpha
Helix 14
14
A
312 317Right-handed alpha
Helix 15
15
A
328 340Right-handed alpha
Helix 16
16
A
382 386Right-handed 310
Helix 17
17
A
485 489Right-handed 310
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There are 9 sheets in PDB entry 4MB5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 215first strand
Strand 2
A
185 188parallel
Strand 3
A
147 151parallel
Strand 4
A
110 116parallel
Strand 5
A
65 71parallel
Strand 6
A
32 38parallel
Strand 7
A
307 311parallel
Strand 8
A
270 274parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 44first strand
Strand 2
A
50 51anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
226 229first strand
Strand 2
A
233 236anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
351 353first strand
Strand 2
A
373 375anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
358 361first strand
Strand 2
A
411 422parallel
Strand 3
A
398 408anti-parallel
Strand 4
A
387 389anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
427 429first strand
Strand 2
A
449 452anti-parallel
Strand 3
A
456 457anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
434 437first strand
Strand 2
A
490 501parallel
Strand 3
A
474 484anti-parallel
Strand 4
A
462 465anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
515 516first strand
Strand 2
A
535 536anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
521 524first strand
Strand 2
A
527 530anti-parallel
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