Analysis of interatomic Contacts of Structural Units in PDB entry:
4MBE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4MBE entry

There are 10 chains in PDB entry 4MBE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 13SER 161
B
 TYR 756SER 805
C
 THR 2THR 95
D
 LEU 13SER 161
E
 ASN 755SER 805
F
 LEU 8THR 95
H
 VAL 330ILE 339
G
 LEU 331ILE 339
X
 ASP 325VAL 330
Y
 GLU 327VAL 330
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 4MBE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 33Right-handed alpha
Helix 2
2
A
41 51Right-handed alpha
Helix 3
3
A
57 69Right-handed alpha
Helix 4
4
A
78 91Right-handed alpha
Helix 5
5
A
93 106Right-handed alpha
Helix 6
6
A
114 125Right-handed alpha
Helix 7
7
A
130 140Right-handed alpha
Helix 8
8
A
151 160Right-handed alpha
Helix 9
9
B
757 805Right-handed alpha
Helix 10
10
C
4 19Right-handed alpha
Helix 11
11
C
20 36Right-handed alpha
Helix 12
12
C
37 51Right-handed alpha
Helix 13
13
C
61 72Right-handed alpha
Helix 14
14
C
74 91Right-handed alpha
Helix 15
15
D
18 33Right-handed alpha
Helix 16
16
D
41 51Right-handed alpha
Helix 17
17
D
57 69Right-handed alpha
Helix 18
18
D
78 91Right-handed alpha
Helix 19
19
D
93 106Right-handed alpha
Helix 20
20
D
114 125Right-handed alpha
Helix 21
21
D
130 140Right-handed alpha
Helix 22
22
D
151 159Right-handed alpha
Helix 23
23
E
756 805Right-handed alpha
Helix 24
24
F
9 19Right-handed alpha
Helix 25
25
F
20 36Right-handed alpha
Helix 26
26
F
37 51Right-handed alpha
Helix 27
27
F
57 72Right-handed alpha
Helix 28
28
F
74 90Right-handed alpha
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There are 4 sheets in PDB entry 4MBE. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 40first strand
Strand 2
A
76 77anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 113first strand
Strand 2
A
149 150anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
39 40first strand
Strand 2
D
76 77anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
112 113first strand
Strand 2
D
149 150anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il