Analysis of interatomic Contacts of Structural Units in PDB entry:
4MBO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4MBO entry

There are 2 chains in PDB entry 4MBO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 317PRO 600
A
 GLN 602ASN 627
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 4MBO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
322 326Right-handed 310
Helix 2
2
A
416 421Right-handed alpha
Helix 3
3
A
545 549Right-handed 310
Helix 4
4
A
566 569Right-handed 310
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There are 5 sheets in PDB entry 4MBO. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
327 334first strand
Strand 2
A
352 360anti-parallel
Strand 3
A
425 435anti-parallel
Strand 4
A
377 378anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
343 345first strand
Strand 2
A
457 466parallel
Strand 3
A
448 454anti-parallel
Strand 4
A
368 373anti-parallel
Strand 5
A
410 415anti-parallel
Strand 6
A
398 404anti-parallel
Strand 7
A
391 392anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
471 474first strand
Strand 2
A
478 490anti-parallel
Strand 3
A
495 502anti-parallel
Strand 4
A
592 600anti-parallel
Strand 5
A
538 544anti-parallel
Strand 6
A
563 564anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
471 474first strand
Strand 2
A
478 490anti-parallel
Strand 3
A
509 511anti-parallel
Strand 4
A
586 587anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
571 573first strand
Strand 2
A
578 581anti-parallel
Strand 3
A
519 524anti-parallel
Strand 4
A
604 611anti-parallel
Strand 5
A
618 625anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il