Analysis of interatomic Contacts of Structural Units in PDB entry:
4MBS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4MBS entry

There are 2 chains in PDB entry 4MBS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 19GLN 313
B
 PRO 19GLN 313
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 4MBS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
25 58Right-handed alpha
Helix 2
2
A
63 92Right-handed alpha
Helix 3
3
A
97 132Right-handed alpha
Helix 4
4
A
132 140Right-handed alpha
Helix 5
5
A
141 166Right-handed alpha
Helix 6
6
A
186 203Right-handed alpha
Helix 7
7
A
203 1001Right-handed alpha
Helix 8
8
A
1019 1023Right-handed 310
Helix 9
9
A
1029 1033Right-handed 310
Helix 10
10
A
1045 1047Right-handed 310
Helix 11
11
A
228 233Right-handed alpha
Helix 12
12
A
233 260Right-handed alpha
Helix 13
13
A
260 265Right-handed alpha
Helix 14
14
A
268 289Right-handed alpha
Helix 15
15
A
292 301Right-handed alpha
Helix 16
16
A
301 313Right-handed alpha
Helix 17
17
B
25 58Right-handed alpha
Helix 18
18
B
63 92Right-handed alpha
Helix 19
19
B
97 132Right-handed alpha
Helix 20
20
B
132 140Right-handed alpha
Helix 21
21
B
141 166Right-handed alpha
Helix 22
22
B
186 203Right-handed alpha
Helix 23
23
B
203 1002Right-handed alpha
Helix 24
24
B
1019 1023Right-handed 310
Helix 25
25
B
1029 1033Right-handed 310
Helix 26
26
B
1045 1047Right-handed 310
Helix 27
27
B
228 233Right-handed alpha
Helix 28
28
B
233 260Right-handed alpha
Helix 29
29
B
260 265Right-handed alpha
Helix 30
30
B
268 289Right-handed alpha
Helix 31
31
B
292 301Right-handed alpha
Helix 32
32
B
301 311Right-handed alpha
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There are 4 sheets in PDB entry 4MBS. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 172first strand
Strand 2
A
175 180anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1012 1013first strand
Strand 2
A
1004 1006anti-parallel
Strand 3
A
1049 1051anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
167 172first strand
Strand 2
B
175 180anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1012 1013first strand
Strand 2
B
1004 1006anti-parallel
Strand 3
B
1049 1051anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il