Analysis of interatomic Contacts of Structural Units in PDB entry:
4MBZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4MBZ entry

There are 5 chains in PDB entry 4MBZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 25	PRO 301
B	SER 25	PRO 299
C	SER 25	PRO 299
D	HIS 26	PRO 299
E	SER 25	CYS 210

There are 30 helices in PDB entry 4MBZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	121	126	Right-handed 310
Helix 2	2	A	184	189	Right-handed 310
Helix 3	3	A	255	257	Right-handed 310
Helix 4	4	B	121	126	Right-handed 310
Helix 5	5	B	184	189	Right-handed 310
Helix 6	6	B	255	257	Right-handed 310
Helix 7	7	C	121	126	Right-handed 310
Helix 8	8	C	184	189	Right-handed 310
Helix 9	9	C	255	257	Right-handed 310
Helix 10	10	D	121	126	Right-handed 310
Helix 11	11	D	184	189	Right-handed 310
Helix 12	12	D	255	257	Right-handed 310
Helix 13	13	E	121	126	Right-handed 310
Helix 14	14	E	184	189	Right-handed 310
Helix 15	15	E	255	257	Right-handed 310
Helix 16	16	F	121	126	Right-handed 310
Helix 17	17	F	184	189	Right-handed 310
Helix 18	18	F	255	257	Right-handed 310
Helix 19	19	G	121	126	Right-handed 310
Helix 20	20	G	184	189	Right-handed 310
Helix 21	21	G	255	257	Right-handed 310
Helix 22	22	H	121	126	Right-handed 310
Helix 23	23	H	184	189	Right-handed 310
Helix 24	24	H	255	257	Right-handed 310
Helix 25	25	I	121	126	Right-handed 310
Helix 26	26	I	184	189	Right-handed 310
Helix 27	27	I	255	257	Right-handed 310
Helix 28	28	J	121	126	Right-handed 310
Helix 29	29	J	184	189	Right-handed 310
Helix 30	30	J	255	257	Right-handed 310

There are 45 sheets in PDB entry 4MBZ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP, AQ, AR, AS,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	36	first strand
Strand 2	J	26	36	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	49	first strand
Strand 2	A	285	297	anti-parallel
Strand 3	A	106	119	anti-parallel
Strand 4	A	243	244	anti-parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	89	94	first strand
Strand 2	A	259	272	anti-parallel
Strand 3	A	278	282	anti-parallel

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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	89	94	first strand
Strand 2	A	259	272	anti-parallel
Strand 3	A	149	156	anti-parallel
Strand 4	A	219	226	anti-parallel
Strand 5	E	234	238	anti-parallel

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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	195	197	first strand
Strand 2	A	161	164	anti-parallel
Strand 3	A	209	211	anti-parallel

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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	234	238	first strand
Strand 2	B	219	226	anti-parallel
Strand 3	B	149	156	anti-parallel
Strand 4	B	259	272	anti-parallel
Strand 5	B	89	94	anti-parallel

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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	234	238	first strand
Strand 2	B	219	226	anti-parallel
Strand 3	B	149	156	anti-parallel
Strand 4	B	259	272	anti-parallel
Strand 5	B	278	282	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	49	first strand
Strand 2	C	285	297	anti-parallel
Strand 3	C	106	119	anti-parallel
Strand 4	C	243	244	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	49	first strand
Strand 2	C	285	297	anti-parallel
Strand 3	B	26	36	parallel
Strand 4	I	26	36	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	42	49	first strand
Strand 2	B	285	297	anti-parallel
Strand 3	B	106	119	anti-parallel
Strand 4	B	243	244	anti-parallel

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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	195	197	first strand
Strand 2	B	161	164	anti-parallel
Strand 3	B	209	211	anti-parallel

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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	234	238	first strand
Strand 2	C	219	226	anti-parallel
Strand 3	C	149	156	anti-parallel
Strand 4	C	259	272	anti-parallel
Strand 5	C	89	94	anti-parallel

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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	234	238	first strand
Strand 2	C	219	226	anti-parallel
Strand 3	C	149	156	anti-parallel
Strand 4	C	259	272	anti-parallel
Strand 5	C	278	282	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	26	36	first strand
Strand 2	H	26	36	anti-parallel

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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	195	197	first strand
Strand 2	C	161	164	anti-parallel
Strand 3	C	209	211	anti-parallel

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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	234	238	first strand
Strand 2	D	219	226	anti-parallel
Strand 3	D	149	156	anti-parallel
Strand 4	D	259	272	anti-parallel
Strand 5	D	89	94	anti-parallel

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There are 5 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	234	238	first strand
Strand 2	D	219	226	anti-parallel
Strand 3	D	149	156	anti-parallel
Strand 4	D	259	272	anti-parallel
Strand 5	D	278	282	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	27	36	first strand
Strand 2	G	26	35	anti-parallel

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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	42	49	first strand
Strand 2	D	285	297	anti-parallel
Strand 3	D	106	119	anti-parallel
Strand 4	D	243	244	anti-parallel

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There are 3 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	195	197	first strand
Strand 2	D	161	164	anti-parallel
Strand 3	D	209	211	anti-parallel

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There are 5 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	234	238	first strand
Strand 2	E	219	226	anti-parallel
Strand 3	E	149	156	anti-parallel
Strand 4	E	259	272	anti-parallel
Strand 5	E	89	94	anti-parallel

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There are 5 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	234	238	first strand
Strand 2	E	219	226	anti-parallel
Strand 3	E	149	156	anti-parallel
Strand 4	E	259	272	anti-parallel
Strand 5	E	278	282	anti-parallel

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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	26	36	first strand
Strand 2	F	26	36	anti-parallel

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There are 4 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	42	49	first strand
Strand 2	E	285	297	anti-parallel
Strand 3	E	106	119	anti-parallel
Strand 4	E	243	244	anti-parallel

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There are 3 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	195	197	first strand
Strand 2	E	161	164	anti-parallel
Strand 3	E	209	211	anti-parallel

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There are 4 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	42	49	first strand
Strand 2	F	285	297	anti-parallel
Strand 3	F	106	119	anti-parallel
Strand 4	F	243	244	anti-parallel

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There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	89	94	first strand
Strand 2	F	259	272	anti-parallel
Strand 3	F	278	282	anti-parallel

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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	89	94	first strand
Strand 2	F	259	272	anti-parallel
Strand 3	F	149	156	anti-parallel
Strand 4	F	219	226	anti-parallel
Strand 5	J	234	238	anti-parallel

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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	195	197	first strand
Strand 2	F	161	164	anti-parallel
Strand 3	F	209	211	anti-parallel

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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	234	238	first strand
Strand 2	G	219	226	anti-parallel
Strand 3	G	149	156	anti-parallel
Strand 4	G	259	272	anti-parallel
Strand 5	G	89	94	anti-parallel

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There are 5 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	234	238	first strand
Strand 2	G	219	226	anti-parallel
Strand 3	G	149	156	anti-parallel
Strand 4	G	259	272	anti-parallel
Strand 5	G	278	282	anti-parallel

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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	42	49	first strand
Strand 2	G	285	296	anti-parallel
Strand 3	G	107	119	anti-parallel
Strand 4	G	243	244	anti-parallel

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There are 3 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	195	197	first strand
Strand 2	G	161	164	anti-parallel
Strand 3	G	209	211	anti-parallel

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There are 5 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	234	238	first strand
Strand 2	H	219	226	anti-parallel
Strand 3	H	149	156	anti-parallel
Strand 4	H	259	272	anti-parallel
Strand 5	H	89	94	anti-parallel

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There are 5 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	234	238	first strand
Strand 2	H	219	226	anti-parallel
Strand 3	H	149	156	anti-parallel
Strand 4	H	259	272	anti-parallel
Strand 5	H	278	282	anti-parallel

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There are 4 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	42	49	first strand
Strand 2	H	285	296	anti-parallel
Strand 3	H	107	119	anti-parallel
Strand 4	H	243	244	anti-parallel

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There are 3 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	195	197	first strand
Strand 2	H	161	164	anti-parallel
Strand 3	H	209	211	anti-parallel

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There are 5 strands in AL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	234	238	first strand
Strand 2	I	219	226	anti-parallel
Strand 3	I	149	156	anti-parallel
Strand 4	I	259	272	anti-parallel
Strand 5	I	89	94	anti-parallel

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There are 5 strands in AM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	234	238	first strand
Strand 2	I	219	226	anti-parallel
Strand 3	I	149	156	anti-parallel
Strand 4	I	259	272	anti-parallel
Strand 5	I	278	282	anti-parallel

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There are 4 strands in AN sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	42	49	first strand
Strand 2	I	285	297	anti-parallel
Strand 3	I	106	119	anti-parallel
Strand 4	I	243	244	anti-parallel

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There are 3 strands in AO sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	195	197	first strand
Strand 2	I	161	164	anti-parallel
Strand 3	I	209	211	anti-parallel

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There are 5 strands in AP sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	234	238	first strand
Strand 2	J	219	226	anti-parallel
Strand 3	J	149	156	anti-parallel
Strand 4	J	259	272	anti-parallel
Strand 5	J	89	94	anti-parallel

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There are 5 strands in AQ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	234	238	first strand
Strand 2	J	219	226	anti-parallel
Strand 3	J	149	156	anti-parallel
Strand 4	J	259	272	anti-parallel
Strand 5	J	278	282	anti-parallel

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There are 4 strands in AR sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	42	49	first strand
Strand 2	J	285	297	anti-parallel
Strand 3	J	106	119	anti-parallel
Strand 4	J	243	244	anti-parallel

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There are 3 strands in AS sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	195	197	first strand
Strand 2	J	161	164	anti-parallel
Strand 3	J	209	211	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4MBZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
4MBZ