Analysis of interatomic Contacts of Structural Units in PDB entry:
4MCJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4MCJ entry

There are 9 chains in PDB entry 4MCJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0ARG 174
B
 ALA 22MSE 173
C
 GLN 23ARG 174
D
 GLY 0ARG 174
E
 GLY 0MSE 173
F
 ALA 22MSE 173
G
 GLY 0ARG 174
H
 ALA 22MSE 173
I
 ALA 22TRP 67
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 4MCJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
39 43Right-handed 310
Helix 2
2
A
60 70Right-handed alpha
Helix 3
3
A
90 108Right-handed alpha
Helix 4
4
A
121 132Right-handed alpha
Helix 5
5
A
147 159Right-handed alpha
Helix 6
6
A
165 172Right-handed alpha
Helix 7
7
B
39 43Right-handed 310
Helix 8
8
B
59 70Right-handed alpha
Helix 9
9
B
90 108Right-handed alpha
Helix 10
10
B
121 132Right-handed alpha
Helix 11
11
B
147 159Right-handed alpha
Helix 12
12
B
165 172Right-handed alpha
Helix 13
13
C
39 43Right-handed 310
Helix 14
14
C
59 70Right-handed alpha
Helix 15
15
C
90 108Right-handed alpha
Helix 16
16
C
121 132Right-handed alpha
Helix 17
17
C
147 159Right-handed alpha
Helix 18
18
C
165 173Right-handed alpha
Helix 19
19
D
39 43Right-handed 310
Helix 20
20
D
60 70Right-handed alpha
Helix 21
21
D
90 108Right-handed alpha
Helix 22
22
D
121 132Right-handed alpha
Helix 23
23
D
147 159Right-handed alpha
Helix 24
24
D
165 172Right-handed alpha
Helix 25
25
E
39 43Right-handed 310
Helix 26
26
E
60 70Right-handed alpha
Helix 27
27
E
90 108Right-handed alpha
Helix 28
28
E
121 132Right-handed alpha
Helix 29
29
E
147 159Right-handed alpha
Helix 30
30
E
165 172Right-handed alpha
Helix 31
31
F
39 43Right-handed 310
Helix 32
32
F
59 70Right-handed alpha
Helix 33
33
F
90 108Right-handed alpha
Helix 34
34
F
121 132Right-handed alpha
Helix 35
35
F
147 159Right-handed alpha
Helix 36
36
F
165 172Right-handed alpha
Helix 37
37
G
39 43Right-handed 310
Helix 38
38
G
59 70Right-handed alpha
Helix 39
39
G
90 108Right-handed alpha
Helix 40
40
G
121 132Right-handed alpha
Helix 41
41
G
147 159Right-handed alpha
Helix 42
42
G
165 172Right-handed alpha
Helix 43
43
H
39 43Right-handed 310
Helix 44
44
H
60 70Right-handed alpha
Helix 45
45
H
90 108Right-handed alpha
Helix 46
46
H
121 132Right-handed alpha
Helix 47
47
H
147 159Right-handed alpha
Helix 48
48
H
165 172Right-handed alpha
Helix 49
49
I
39 43Right-handed 310
Helix 50
50
I
59 70Right-handed alpha
Helix 51
51
I
90 108Right-handed alpha
Helix 52
52
I
121 132Right-handed alpha
Helix 53
53
I
147 159Right-handed alpha
Helix 54
54
I
165 171Right-handed alpha
Helix 55
55
J
39 43Right-handed 310
Helix 56
56
J
59 70Right-handed alpha
Helix 57
57
J
90 108Right-handed alpha
Helix 58
58
J
121 132Right-handed alpha
Helix 59
59
J
147 159Right-handed alpha
Helix 60
60
J
165 173Right-handed alpha
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There are 10 sheets in PDB entry 4MCJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 29first strand
Strand 2
A
75 79parallel
Strand 3
A
44 50parallel
Strand 4
A
110 115parallel
Strand 5
A
137 141parallel
Strand 6
A
162 163parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 29first strand
Strand 2
B
75 79parallel
Strand 3
B
44 50parallel
Strand 4
B
110 115parallel
Strand 5
B
137 141parallel
Strand 6
B
162 163parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
25 29first strand
Strand 2
C
75 79parallel
Strand 3
C
44 50parallel
Strand 4
C
110 115parallel
Strand 5
C
137 141parallel
Strand 6
C
162 163parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
25 29first strand
Strand 2
D
75 79parallel
Strand 3
D
44 50parallel
Strand 4
D
110 115parallel
Strand 5
D
137 141parallel
Strand 6
D
162 163parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
25 29first strand
Strand 2
E
75 79parallel
Strand 3
E
44 50parallel
Strand 4
E
110 115parallel
Strand 5
E
137 141parallel
Strand 6
E
162 163parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
25 29first strand
Strand 2
F
75 79parallel
Strand 3
F
44 50parallel
Strand 4
F
110 115parallel
Strand 5
F
137 141parallel
Strand 6
F
162 163parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
25 29first strand
Strand 2
G
75 79parallel
Strand 3
G
44 50parallel
Strand 4
G
110 115parallel
Strand 5
G
137 141parallel
Strand 6
G
162 163parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
25 29first strand
Strand 2
H
75 79parallel
Strand 3
H
44 50parallel
Strand 4
H
110 115parallel
Strand 5
H
137 141parallel
Strand 6
H
162 163parallel
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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
25 29first strand
Strand 2
I
75 79parallel
Strand 3
I
44 50parallel
Strand 4
I
110 115parallel
Strand 5
I
137 141parallel
Strand 6
I
162 163parallel
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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
25 29first strand
Strand 2
J
75 79parallel
Strand 3
J
44 50parallel
Strand 4
J
110 115parallel
Strand 5
J
137 141parallel
Strand 6
J
162 163parallel
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