Analysis of interatomic Contacts of Structural Units in PDB entry:
4MDC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4MDC entry

There are 4 chains in PDB entry 4MDC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0PHE 230
B
 PHE -2PHE 230
C
 PHE -2PHE 230
D
 PHE -2PHE 230
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 67 helices in PDB entry 4MDC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 23Right-handed alpha
Helix 2
2
A
33 37Right-handed 310
Helix 3
3
A
38 45Right-handed alpha
Helix 4
4
A
63 75Right-handed alpha
Helix 5
5
A
76 83Right-handed 310
Helix 6
6
A
88 104Right-handed alpha
Helix 7
7
A
104 110Right-handed alpha
Helix 8
8
A
110 119Right-handed alpha
Helix 9
9
A
119 124Right-handed alpha
Helix 10
10
A
125 129Right-handed 310
Helix 11
11
A
134 144Right-handed alpha
Helix 12
12
A
144 159Right-handed alpha
Helix 13
13
A
168 184Right-handed alpha
Helix 14
14
A
188 191Right-handed 310
Helix 15
15
A
192 204Right-handed alpha
Helix 16
16
A
205 207Right-handed 310
Helix 17
17
A
208 214Right-handed alpha
Helix 18
18
B
10 23Right-handed alpha
Helix 19
19
B
38 45Right-handed alpha
Helix 20
20
B
63 75Right-handed alpha
Helix 21
21
B
76 80Right-handed 310
Helix 22
22
B
88 104Right-handed alpha
Helix 23
23
B
104 110Right-handed alpha
Helix 24
24
B
110 119Right-handed alpha
Helix 25
25
B
119 124Right-handed alpha
Helix 26
26
B
125 129Right-handed 310
Helix 27
27
B
134 144Right-handed alpha
Helix 28
28
B
144 159Right-handed alpha
Helix 29
29
B
168 184Right-handed alpha
Helix 30
30
B
188 191Right-handed 310
Helix 31
31
B
192 204Right-handed alpha
Helix 32
32
B
205 207Right-handed 310
Helix 33
33
B
208 214Right-handed alpha
Helix 34
34
C
10 23Right-handed alpha
Helix 35
35
C
33 37Right-handed 310
Helix 36
36
C
38 45Right-handed alpha
Helix 37
37
C
63 75Right-handed alpha
Helix 38
38
C
76 80Right-handed 310
Helix 39
39
C
88 104Right-handed alpha
Helix 40
40
C
104 110Right-handed alpha
Helix 41
41
C
110 119Right-handed alpha
Helix 42
42
C
119 124Right-handed alpha
Helix 43
43
C
125 129Right-handed 310
Helix 44
44
C
134 144Right-handed alpha
Helix 45
45
C
144 156Right-handed alpha
Helix 46
46
C
168 184Right-handed alpha
Helix 47
47
C
188 191Right-handed 310
Helix 48
48
C
192 204Right-handed alpha
Helix 49
49
C
205 207Right-handed 310
Helix 50
50
C
208 214Right-handed alpha
Helix 51
51
D
10 23Right-handed alpha
Helix 52
52
D
33 37Right-handed 310
Helix 53
53
D
38 45Right-handed alpha
Helix 54
54
D
63 75Right-handed alpha
Helix 55
55
D
76 83Right-handed 310
Helix 56
56
D
88 104Right-handed alpha
Helix 57
57
D
104 110Right-handed alpha
Helix 58
58
D
110 119Right-handed alpha
Helix 59
59
D
119 124Right-handed alpha
Helix 60
60
D
125 129Right-handed 310
Helix 61
61
D
134 144Right-handed alpha
Helix 62
62
D
144 159Right-handed alpha
Helix 63
63
D
168 184Right-handed alpha
Helix 64
64
D
188 191Right-handed 310
Helix 65
65
D
192 204Right-handed alpha
Helix 66
66
D
205 207Right-handed 310
Helix 67
67
D
208 214Right-handed alpha
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There are 4 sheets in PDB entry 4MDC. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 31first strand
Strand 2
A
3 6parallel
Strand 3
A
52 54anti-parallel
Strand 4
A
60 62anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 31first strand
Strand 2
B
3 6parallel
Strand 3
B
52 54anti-parallel
Strand 4
B
60 62anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
28 31first strand
Strand 2
C
3 6parallel
Strand 3
C
52 54anti-parallel
Strand 4
C
60 62anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
28 31first strand
Strand 2
D
3 6parallel
Strand 3
D
52 54anti-parallel
Strand 4
D
60 62anti-parallel
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