Analysis of interatomic Contacts of Structural Units in PDB entry:
4MDW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4MDW entry

There are 14 chains in PDB entry 4MDW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 59SER 77
A
 ASN 79PRO 80
A
 TYR 82TYR 82
A
 VAL 84MSE 95
A
 GLY 97MSE 98
A
 GLY 100HIS 130
A
 TRP 132ILE 138
A
 ASP 140ASP 143
A
 THR 145MSE 159
A
 GLY 161MSE 162
A
 GLY 164GLU 173
A
 THR 175GLU 189
A
 VAL 191VAL 191
A
 ASN 193ALA 204
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 2 helices in PDB entry 4MDW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
59 64Right-handed alpha
Helix 2
2
A
136 138Right-handed 310
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There are 2 sheets in PDB entry 4MDW. Click on sheet of interest to get list of strands forming it: A, B,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 134first strand
Strand 2
A
102 118anti-parallel
Strand 3
A
166 183anti-parallel
Strand 4
A
190 198anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 153first strand
Strand 2
A
166 183anti-parallel
Strand 3
A
102 118anti-parallel
Strand 4
A
87 90anti-parallel
Strand 5
A
202 204anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il