Analysis of interatomic Contacts of Structural Units in PDB entry:
4ME3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4ME3 entry

There is 1 chain in PDB entry 4ME3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 7VAL 262
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 4ME3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 22Right-handed alpha
Helix 2
2
A
24 33Right-handed alpha
Helix 3
3
A
45 52Right-handed alpha
Helix 4
4
A
52 62Right-handed alpha
Helix 5
5
A
62 78Right-handed alpha
Helix 6
6
A
79 83Right-handed 310
Helix 7
7
A
105 109Right-handed 310
Helix 8
8
A
110 114Right-handed 310
Helix 9
9
A
169 174Right-handed alpha
Helix 10
10
A
181 184Right-handed 310
Helix 11
11
A
217 219Right-handed 310
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There are 3 sheets in PDB entry 4ME3. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 44first strand
Strand 2
A
91 95parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 151first strand
Strand 2
A
131 141anti-parallel
Strand 3
A
185 195anti-parallel
Strand 4
A
177 179first strand
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 151first strand
Strand 2
A
131 141anti-parallel
Strand 3
A
209 215first strand
Strand 4
A
244 261parallel
Strand 5
A
227 241anti-parallel
Strand 6
A
117 127anti-parallel
Strand 7
A
185 195anti-parallel
Strand 8
A
177 179first strand
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il