Analysis of interatomic Contacts of Structural Units in PDB entry:
4MEE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4MEE entry

There is 1 chain in PDB entry 4MEE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 962PHE 1286
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There is 1 helix in PDB entry 4MEE. Click on helix number for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
965 980Right-handed alpha
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There are 2 sheets in PDB entry 4MEE. Click on sheet of interest to get list of strands forming it: A, B,

There are 14 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1042 1043first strand
Strand 2
A
1047 1066anti-parallel
Strand 3
A
1072 1089anti-parallel
Strand 4
A
1097 1115anti-parallel
Strand 5
A
1120 1144anti-parallel
Strand 6
A
1150 1168anti-parallel
Strand 7
A
1187 1200anti-parallel
Strand 8
A
1214 1222anti-parallel
Strand 9
A
1242 1253anti-parallel
Strand 10
A
1258 1268anti-parallel
Strand 11
A
1274 1284anti-parallel
Strand 12
A
1005 1017anti-parallel
Strand 13
A
1023 1039anti-parallel
Strand 14
A
1047 1066anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1171 1172first strand
Strand 2
A
1178 1182anti-parallel
Strand 3
A
1227 1230anti-parallel
Strand 4
A
1235 1237anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il