Analysis of interatomic Contacts of Structural Units in PDB entry:
4MF9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4MF9 entry

There are 2 chains in PDB entry 4MF9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 9LEU 354
B
 LEU 14LEU 354
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 4MF9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 25Right-handed alpha
Helix 2
2
A
29 37Right-handed alpha
Helix 3
3
A
40 47Right-handed alpha
Helix 4
4
A
59 67Right-handed alpha
Helix 5
5
A
68 70Right-handed 310
Helix 6
6
A
156 158Right-handed 310
Helix 7
7
A
159 168Right-handed alpha
Helix 8
8
A
189 193Right-handed 310
Helix 9
9
A
194 205Right-handed alpha
Helix 10
10
A
207 209Right-handed 310
Helix 11
11
A
210 219Right-handed alpha
Helix 12
12
A
221 230Right-handed alpha
Helix 13
13
A
240 253Right-handed alpha
Helix 14
14
A
297 299Right-handed 310
Helix 15
15
A
341 350Right-handed alpha
Helix 16
16
B
15 25Right-handed alpha
Helix 17
17
B
29 37Right-handed alpha
Helix 18
18
B
40 47Right-handed alpha
Helix 19
19
B
59 67Right-handed alpha
Helix 20
20
B
68 70Right-handed 310
Helix 21
21
B
156 158Right-handed 310
Helix 22
22
B
159 168Right-handed alpha
Helix 23
23
B
189 193Right-handed 310
Helix 24
24
B
194 204Right-handed alpha
Helix 25
25
B
207 209Right-handed 310
Helix 26
26
B
210 219Right-handed alpha
Helix 27
27
B
221 230Right-handed alpha
Helix 28
28
B
240 253Right-handed alpha
Helix 29
29
B
297 299Right-handed 310
Helix 30
30
B
341 351Right-handed alpha
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There are 4 sheets in PDB entry 4MF9. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 56first strand
Strand 2
A
118 127anti-parallel
Strand 3
A
132 140anti-parallel
Strand 4
A
145 151anti-parallel
Strand 5
A
72 78anti-parallel
Strand 6
A
82 89anti-parallel
Strand 7
A
290 295anti-parallel
Strand 8
A
282 287anti-parallel
Strand 9
A
276 279anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 95first strand
Strand 2
A
101 104anti-parallel
Strand 3
A
111 114anti-parallel
Strand 4
A
265 271anti-parallel
Strand 5
A
256 262anti-parallel
Strand 6
A
326 332anti-parallel
Strand 7
A
314 320anti-parallel
Strand 8
A
301 307anti-parallel
Strand 9
A
234 237anti-parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 56first strand
Strand 2
B
118 126anti-parallel
Strand 3
B
133 140anti-parallel
Strand 4
B
145 151anti-parallel
Strand 5
B
72 78anti-parallel
Strand 6
B
82 89anti-parallel
Strand 7
B
290 295anti-parallel
Strand 8
B
282 287anti-parallel
Strand 9
B
276 279anti-parallel
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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
93 95first strand
Strand 2
B
101 104anti-parallel
Strand 3
B
111 114anti-parallel
Strand 4
B
265 271anti-parallel
Strand 5
B
256 262anti-parallel
Strand 6
B
326 332anti-parallel
Strand 7
B
314 320anti-parallel
Strand 8
B
301 307anti-parallel
Strand 9
B
234 237anti-parallel
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