Analysis of interatomic Contacts of Structural Units in PDB entry:
4MFE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4MFE entry

There are 5 chains in PDB entry 4MFE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 471VAL 717
A
 ASP 719ALA 1067
B
 ASP 471VAL 717
B
 ASP 719ALA 1067
C
 ASP 471TYR 631
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are130 helices in PDB entry 4MFE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
471 487Right-handed alpha
Helix 2
2
A
517 537Right-handed alpha
Helix 3
3
A
548 555Right-handed alpha
Helix 4
4
A
560 566Right-handed alpha
Helix 5
5
A
567 575Right-handed alpha
Helix 6
6
A
587 595Right-handed alpha
Helix 7
7
A
599 611Right-handed alpha
Helix 8
8
A
621 625Right-handed 310
Helix 9
9
A
632 647Right-handed alpha
Helix 10
10
A
659 662Right-handed 310
Helix 11
11
A
663 673Right-handed alpha
Helix 12
12
A
692 695Right-handed 310
Helix 13
13
A
696 710Right-handed alpha
Helix 14
14
A
725 740Right-handed alpha
Helix 15
15
A
754 765Right-handed alpha
Helix 16
16
A
774 778Right-handed 310
Helix 17
17
A
785 794Right-handed alpha
Helix 18
18
A
803 820Right-handed alpha
Helix 19
19
A
821 825Right-handed 310
Helix 20
20
A
834 839Right-handed alpha
Helix 21
21
A
841 855Right-handed alpha
Helix 22
22
A
857 859Right-handed 310
Helix 23
23
A
860 875Right-handed alpha
Helix 24
24
A
883 899Right-handed alpha
Helix 25
25
A
901 906Right-handed alpha
Helix 26
26
A
915 924Right-handed alpha
Helix 27
27
A
934 943Right-handed alpha
Helix 28
28
A
951 955Right-handed 310
Helix 29
29
A
960 973Right-handed alpha
Helix 30
30
A
977 987Right-handed alpha
Helix 31
31
A
987 1002Right-handed alpha
Helix 32
32
A
1003 1007Right-handed 310
Helix 33
33
A
1008 1015Right-handed alpha
Helix 34
34
B
472 487Right-handed alpha
Helix 35
35
B
517 537Right-handed alpha
Helix 36
36
B
548 555Right-handed alpha
Helix 37
37
B
560 575Right-handed alpha
Helix 38
38
B
587 597Right-handed alpha
Helix 39
39
B
599 611Right-handed alpha
Helix 40
40
B
621 625Right-handed 310
Helix 41
41
B
632 647Right-handed alpha
Helix 42
42
B
659 662Right-handed 310
Helix 43
43
B
663 673Right-handed alpha
Helix 44
44
B
692 695Right-handed 310
Helix 45
45
B
696 710Right-handed alpha
Helix 46
46
B
725 740Right-handed alpha
Helix 47
47
B
754 765Right-handed alpha
Helix 48
48
B
774 778Right-handed 310
Helix 49
49
B
785 794Right-handed alpha
Helix 50
50
B
803 820Right-handed alpha
Helix 51
51
B
821 825Right-handed 310
Helix 52
52
B
834 839Right-handed alpha
Helix 53
53
B
841 855Right-handed alpha
Helix 54
54
B
857 859Right-handed 310
Helix 55
55
B
860 875Right-handed alpha
Helix 56
56
B
883 898Right-handed alpha
Helix 57
57
B
901 906Right-handed alpha
Helix 58
58
B
915 924Right-handed alpha
Helix 59
59
B
934 942Right-handed alpha
Helix 60
60
B
951 956Right-handed alpha
Helix 61
61
B
960 973Right-handed alpha
Helix 62
62
B
977 987Right-handed alpha
Helix 63
63
B
987 1001Right-handed alpha
Helix 64
64
B
1003 1007Right-handed 310
Helix 65
65
B
1008 1015Right-handed alpha
Helix 66
66
C
472 487Right-handed alpha
Helix 67
67
C
517 537Right-handed alpha
Helix 68
68
C
548 555Right-handed alpha
Helix 69
69
C
560 575Right-handed alpha
Helix 70
70
C
587 597Right-handed alpha
Helix 71
71
C
599 611Right-handed alpha
Helix 72
72
C
621 625Right-handed 310
Helix 73
73
C
632 647Right-handed alpha
Helix 74
74
C
659 662Right-handed 310
Helix 75
75
C
663 673Right-handed alpha
Helix 76
76
C
692 695Right-handed 310
Helix 77
77
C
696 710Right-handed alpha
Helix 78
78
C
725 740Right-handed alpha
Helix 79
79
C
754 765Right-handed alpha
Helix 80
80
C
774 778Right-handed 310
Helix 81
81
C
785 794Right-handed alpha
Helix 82
82
C
803 820Right-handed alpha
Helix 83
83
C
821 825Right-handed 310
Helix 84
84
C
834 839Right-handed alpha
Helix 85
85
C
841 854Right-handed alpha
Helix 86
86
C
855 856Right-handed 310
Helix 87
87
C
857 859Right-handed 310
Helix 88
88
C
860 875Right-handed alpha
Helix 89
89
C
883 898Right-handed alpha
Helix 90
90
C
901 906Right-handed alpha
Helix 91
91
C
915 924Right-handed alpha
Helix 92
92
C
934 943Right-handed alpha
Helix 93
93
C
951 955Right-handed 310
Helix 94
94
C
960 973Right-handed alpha
Helix 95
95
C
977 987Right-handed alpha
Helix 96
96
C
987 1002Right-handed alpha
Helix 97
97
C
1003 1007Right-handed 310
Helix 98
98
C
1008 1015Right-handed alpha
Helix 99
99
D
472 487Right-handed alpha
Helix 100
100
D
517 526Right-handed alpha
Helix 101
101
D
526 537Right-handed alpha
Helix 102
102
D
548 555Right-handed alpha
Helix 103
103
D
560 575Right-handed alpha
Helix 104
104
D
587 595Right-handed alpha
Helix 105
105
D
599 611Right-handed alpha
Helix 106
106
D
621 625Right-handed 310
Helix 107
107
D
632 646Right-handed alpha
Helix 108
108
D
663 673Right-handed alpha
Helix 109
109
D
692 695Right-handed 310
Helix 110
110
D
696 710Right-handed alpha
Helix 111
111
D
725 740Right-handed alpha
Helix 112
112
D
754 765Right-handed alpha
Helix 113
113
D
774 778Right-handed 310
Helix 114
114
D
785 794Right-handed alpha
Helix 115
115
D
803 820Right-handed alpha
Helix 116
116
D
821 825Right-handed 310
Helix 117
117
D
834 839Right-handed alpha
Helix 118
118
D
841 855Right-handed alpha
Helix 119
119
D
857 859Right-handed 310
Helix 120
120
D
860 875Right-handed alpha
Helix 121
121
D
883 898Right-handed alpha
Helix 122
122
D
901 907Right-handed alpha
Helix 123
123
D
915 924Right-handed alpha
Helix 124
124
D
934 942Right-handed alpha
Helix 125
125
D
951 956Right-handed alpha
Helix 126
126
D
962 972Right-handed alpha
Helix 127
127
D
977 987Right-handed alpha
Helix 128
128
D
987 1002Right-handed alpha
Helix 129
129
D
1003 1007Right-handed 310
Helix 130
130
D
1008 1015Right-handed alpha
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There are 8 sheets in PDB entry 4MFE. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
541 544first strand
Strand 2
A
580 585parallel
Strand 3
A
615 620parallel
Strand 4
A
650 653parallel
Strand 5
A
676 682parallel
Strand 6
A
714 718parallel
Strand 7
A
744 747parallel
Strand 8
A
769 772parallel
Strand 9
A
541 544parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1021 1025first strand
Strand 2
A
1031 1039anti-parallel
Strand 3
A
1047 1054anti-parallel
Strand 4
A
1057 1064anti-parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
541 544first strand
Strand 2
B
580 585parallel
Strand 3
B
615 620parallel
Strand 4
B
650 653parallel
Strand 5
B
676 682parallel
Strand 6
B
714 719parallel
Strand 7
B
744 748parallel
Strand 8
B
769 772parallel
Strand 9
B
541 544parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1021 1025first strand
Strand 2
B
1031 1039anti-parallel
Strand 3
B
1047 1054anti-parallel
Strand 4
B
1057 1064anti-parallel
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There are 9 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
541 544first strand
Strand 2
C
580 585parallel
Strand 3
C
615 620parallel
Strand 4
C
650 653parallel
Strand 5
C
676 682parallel
Strand 6
C
714 718parallel
Strand 7
C
744 747parallel
Strand 8
C
769 772parallel
Strand 9
C
541 544parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1021 1025first strand
Strand 2
C
1031 1039anti-parallel
Strand 3
C
1047 1054anti-parallel
Strand 4
C
1057 1064anti-parallel
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There are 9 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
541 544first strand
Strand 2
D
580 585parallel
Strand 3
D
615 620parallel
Strand 4
D
650 653parallel
Strand 5
D
676 682parallel
Strand 6
D
714 719parallel
Strand 7
D
744 748parallel
Strand 8
D
769 772parallel
Strand 9
D
541 544parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
1021 1025first strand
Strand 2
D
1031 1039anti-parallel
Strand 3
D
1047 1054anti-parallel
Strand 4
D
1057 1064anti-parallel
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