Analysis of interatomic Contacts of Structural Units in PDB entry:
4MFI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4MFI entry

There is 1 chain in PDB entry 4MFI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 31ALA 433
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 4MFI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
49 64Right-handed alpha
Helix 2
2
A
77 89Right-handed alpha
Helix 3
3
A
103 111Right-handed alpha
Helix 4
4
A
117 125Right-handed alpha
Helix 5
5
A
127 131Right-handed 310
Helix 6
6
A
132 138Right-handed alpha
Helix 7
7
A
161 167Right-handed alpha
Helix 8
8
A
176 192Right-handed alpha
Helix 9
9
A
205 210Right-handed alpha
Helix 10
10
A
210 217Right-handed alpha
Helix 11
11
A
231 246Right-handed alpha
Helix 12
12
A
256 263Right-handed alpha
Helix 13
13
A
275 283Right-handed alpha
Helix 14
14
A
295 299Right-handed 310
Helix 15
15
A
316 331Right-handed alpha
Helix 16
16
A
332 344Right-handed alpha
Helix 17
17
A
349 354Right-handed 310
Helix 18
18
A
355 365Right-handed alpha
Helix 19
19
A
365 375Right-handed alpha
Helix 20
20
A
376 378Right-handed 310
Helix 21
21
A
382 387Right-handed alpha
Helix 22
22
A
390 406Right-handed alpha
Helix 23
23
A
408 428Right-handed alpha
Helix 24
24
A
429 433Right-handed 310
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There are 5 sheets in PDB entry 4MFI. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 73first strand
Strand 2
A
39 43parallel
Strand 3
A
97 101parallel
Strand 4
A
305 310anti-parallel
Strand 5
A
148 153anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 141first strand
Strand 2
A
144 145anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
268 272first strand
Strand 2
A
155 160anti-parallel
Strand 3
A
287 290anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 201first strand
Strand 2
A
251 254parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 223first strand
Strand 2
A
226 227anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il