Analysis of interatomic Contacts of Structural Units in PDB entry:
4MI2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4MI2 entry

There are 3 chains in PDB entry 4MI2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 8ARG 267
B
 ALA 7ARG 267
C
 ALA 7ARG 267
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 4MI2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
25 29Right-handed 310
Helix 2
2
A
33 50Right-handed alpha
Helix 3
3
A
70 81Right-handed alpha
Helix 4
4
A
82 85Right-handed 310
Helix 5
5
A
86 92Right-handed alpha
Helix 6
6
A
92 103Right-handed alpha
Helix 7
7
A
117 125Right-handed alpha
Helix 8
8
A
140 145Right-handed 310
Helix 9
9
A
151 161Right-handed alpha
Helix 10
10
A
161 172Right-handed alpha
Helix 11
11
A
177 183Right-handed alpha
Helix 12
12
A
194 208Right-handed alpha
Helix 13
13
A
210 225Right-handed alpha
Helix 14
14
A
228 245Right-handed alpha
Helix 15
15
A
246 258Right-handed alpha
Helix 16
16
B
25 29Right-handed 310
Helix 17
17
B
33 50Right-handed alpha
Helix 18
18
B
70 81Right-handed alpha
Helix 19
19
B
82 85Right-handed 310
Helix 20
20
B
86 92Right-handed alpha
Helix 21
21
B
92 103Right-handed alpha
Helix 22
22
B
117 125Right-handed alpha
Helix 23
23
B
141 145Right-handed 310
Helix 24
24
B
151 161Right-handed alpha
Helix 25
25
B
161 172Right-handed alpha
Helix 26
26
B
177 183Right-handed alpha
Helix 27
27
B
194 208Right-handed alpha
Helix 28
28
B
210 224Right-handed alpha
Helix 29
29
B
228 245Right-handed alpha
Helix 30
30
B
246 258Right-handed alpha
Helix 31
31
C
25 29Right-handed 310
Helix 32
32
C
33 50Right-handed alpha
Helix 33
33
C
70 81Right-handed alpha
Helix 34
34
C
82 85Right-handed 310
Helix 35
35
C
86 92Right-handed alpha
Helix 36
36
C
92 103Right-handed alpha
Helix 37
37
C
117 125Right-handed alpha
Helix 38
38
C
141 145Right-handed 310
Helix 39
39
C
151 161Right-handed alpha
Helix 40
40
C
161 172Right-handed alpha
Helix 41
41
C
177 183Right-handed alpha
Helix 42
42
C
194 208Right-handed alpha
Helix 43
43
C
210 225Right-handed alpha
Helix 44
44
C
228 245Right-handed alpha
Helix 45
45
C
246 258Right-handed alpha
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There are 6 sheets in PDB entry 4MI2. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 13first strand
Strand 2
A
18 23anti-parallel
Strand 3
A
55 60parallel
Strand 4
A
107 111parallel
Strand 5
A
128 132parallel
Strand 6
A
188 190parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 116first strand
Strand 2
A
136 138parallel
Strand 3
A
175 176anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 13first strand
Strand 2
B
18 23anti-parallel
Strand 3
B
55 60parallel
Strand 4
B
107 111parallel
Strand 5
B
128 132parallel
Strand 6
B
188 190parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
114 116first strand
Strand 2
B
136 138parallel
Strand 3
B
175 176anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
9 13first strand
Strand 2
C
18 23anti-parallel
Strand 3
C
55 60parallel
Strand 4
C
107 111parallel
Strand 5
C
128 132parallel
Strand 6
C
188 190parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
114 116first strand
Strand 2
C
136 138parallel
Strand 3
C
175 176anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il