Analysis of interatomic Contacts of Structural Units in PDB entry:
4MIF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4MIF entry

There are 3 chains in PDB entry 4MIF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 13	GLY 617
B	PRO 13	GLY 617
C	PRO 13	PRO 135

There are 76 helices in PDB entry 4MIF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	22	35	Right-handed alpha
Helix 2	2	A	78	81	Right-handed 310
Helix 3	3	A	82	88	Right-handed alpha
Helix 4	4	A	91	100	Right-handed alpha
Helix 5	5	A	138	142	Right-handed 310
Helix 6	6	A	153	158	Right-handed 310
Helix 7	7	A	185	205	Right-handed alpha
Helix 8	8	A	214	230	Right-handed alpha
Helix 9	9	A	257	268	Right-handed alpha
Helix 10	10	A	268	273	Right-handed alpha
Helix 11	11	A	332	344	Right-handed alpha
Helix 12	12	A	397	405	Right-handed alpha
Helix 13	13	A	411	425	Right-handed alpha
Helix 14	14	A	465	469	Right-handed 310
Helix 15	15	A	470	472	Right-handed 310
Helix 16	16	A	513	532	Right-handed alpha
Helix 17	17	A	563	567	Right-handed 310
Helix 18	18	A	585	589	Right-handed 310
Helix 19	19	A	597	617	Right-handed alpha
Helix 20	20	B	22	35	Right-handed alpha
Helix 21	21	B	78	81	Right-handed 310
Helix 22	22	B	82	88	Right-handed alpha
Helix 23	23	B	91	100	Right-handed alpha
Helix 24	24	B	138	142	Right-handed 310
Helix 25	25	B	153	158	Right-handed 310
Helix 26	26	B	185	205	Right-handed alpha
Helix 27	27	B	214	230	Right-handed alpha
Helix 28	28	B	257	268	Right-handed alpha
Helix 29	29	B	268	273	Right-handed alpha
Helix 30	30	B	333	344	Right-handed alpha
Helix 31	31	B	396	405	Right-handed alpha
Helix 32	32	B	411	425	Right-handed alpha
Helix 33	33	B	465	469	Right-handed 310
Helix 34	34	B	470	472	Right-handed 310
Helix 35	35	B	513	532	Right-handed alpha
Helix 36	36	B	563	567	Right-handed 310
Helix 37	37	B	585	589	Right-handed 310
Helix 38	38	B	597	617	Right-handed alpha
Helix 39	39	C	22	35	Right-handed alpha
Helix 40	40	C	78	81	Right-handed 310
Helix 41	41	C	82	88	Right-handed alpha
Helix 42	42	C	91	100	Right-handed alpha
Helix 43	43	C	138	142	Right-handed 310
Helix 44	44	C	153	158	Right-handed 310
Helix 45	45	C	185	205	Right-handed alpha
Helix 46	46	C	214	230	Right-handed alpha
Helix 47	47	C	257	268	Right-handed alpha
Helix 48	48	C	268	273	Right-handed alpha
Helix 49	49	C	333	345	Right-handed alpha
Helix 50	50	C	397	405	Right-handed alpha
Helix 51	51	C	411	425	Right-handed alpha
Helix 52	52	C	465	469	Right-handed 310
Helix 53	53	C	470	472	Right-handed 310
Helix 54	54	C	513	532	Right-handed alpha
Helix 55	55	C	563	567	Right-handed 310
Helix 56	56	C	585	589	Right-handed 310
Helix 57	57	C	597	617	Right-handed alpha
Helix 58	58	D	22	35	Right-handed alpha
Helix 59	59	D	78	81	Right-handed 310
Helix 60	60	D	82	88	Right-handed alpha
Helix 61	61	D	91	100	Right-handed alpha
Helix 62	62	D	138	142	Right-handed 310
Helix 63	63	D	153	158	Right-handed 310
Helix 64	64	D	185	205	Right-handed alpha
Helix 65	65	D	214	230	Right-handed alpha
Helix 66	66	D	257	268	Right-handed alpha
Helix 67	67	D	268	273	Right-handed alpha
Helix 68	68	D	332	344	Right-handed alpha
Helix 69	69	D	396	405	Right-handed alpha
Helix 70	70	D	411	425	Right-handed alpha
Helix 71	71	D	465	469	Right-handed 310
Helix 72	72	D	470	472	Right-handed 310
Helix 73	73	D	513	532	Right-handed alpha
Helix 74	74	D	563	567	Right-handed 310
Helix 75	75	D	585	589	Right-handed 310
Helix 76	76	D	597	617	Right-handed alpha

There are 32 sheets in PDB entry 4MIF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	275	278	first strand
Strand 2	A	39	42	parallel
Strand 3	A	14	19	parallel
Strand 4	A	325	330	parallel
Strand 5	A	581	583	parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	50	54	first strand
Strand 2	A	71	75	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	101	102	first strand
Strand 2	A	147	148	anti-parallel

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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	206	207	first strand
Strand 2	A	242	246	anti-parallel
Strand 3	A	253	255	anti-parallel

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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	237	239	first strand
Strand 2	A	441	443	anti-parallel
Strand 3	A	452	456	anti-parallel
Strand 4	A	474	480	anti-parallel
Strand 5	A	388	395	anti-parallel
Strand 6	A	535	537	anti-parallel

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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	237	239	first strand
Strand 2	A	441	443	anti-parallel
Strand 3	A	452	456	anti-parallel
Strand 4	A	474	480	anti-parallel
Strand 5	A	388	395	anti-parallel
Strand 6	A	544	545	anti-parallel

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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	281	288	first strand
Strand 2	A	299	306	anti-parallel
Strand 3	A	320	323	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	490	498	first strand
Strand 2	A	504	509	anti-parallel

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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	275	279	first strand
Strand 2	B	39	43	parallel
Strand 3	B	14	19	parallel
Strand 4	B	325	330	parallel
Strand 5	B	581	583	parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	50	54	first strand
Strand 2	B	71	75	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	102	first strand
Strand 2	B	147	148	anti-parallel

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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	206	207	first strand
Strand 2	B	242	246	anti-parallel
Strand 3	B	253	255	anti-parallel

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There are 6 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	238	239	first strand
Strand 2	B	441	443	anti-parallel
Strand 3	B	452	456	anti-parallel
Strand 4	B	474	480	anti-parallel
Strand 5	B	388	395	anti-parallel
Strand 6	B	535	537	anti-parallel

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There are 6 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	238	239	first strand
Strand 2	B	441	443	anti-parallel
Strand 3	B	452	456	anti-parallel
Strand 4	B	474	480	anti-parallel
Strand 5	B	388	395	anti-parallel
Strand 6	B	544	545	anti-parallel

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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	281	288	first strand
Strand 2	B	299	306	anti-parallel
Strand 3	B	320	323	anti-parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	490	498	first strand
Strand 2	B	504	509	anti-parallel

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There are 5 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	275	279	first strand
Strand 2	C	39	43	parallel
Strand 3	C	14	19	parallel
Strand 4	C	325	330	parallel
Strand 5	C	581	583	parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	50	54	first strand
Strand 2	C	71	75	anti-parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	102	first strand
Strand 2	C	147	148	anti-parallel

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There are 3 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	206	207	first strand
Strand 2	C	242	246	anti-parallel
Strand 3	C	253	255	anti-parallel

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There are 6 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	238	239	first strand
Strand 2	C	441	443	anti-parallel
Strand 3	C	452	456	anti-parallel
Strand 4	C	474	480	anti-parallel
Strand 5	C	388	395	anti-parallel
Strand 6	C	535	537	anti-parallel

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There are 6 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	238	239	first strand
Strand 2	C	441	443	anti-parallel
Strand 3	C	452	456	anti-parallel
Strand 4	C	474	480	anti-parallel
Strand 5	C	388	395	anti-parallel
Strand 6	C	544	545	anti-parallel

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There are 3 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	281	288	first strand
Strand 2	C	299	306	anti-parallel
Strand 3	C	320	323	anti-parallel

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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	490	498	first strand
Strand 2	C	504	509	anti-parallel

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There are 5 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	275	278	first strand
Strand 2	D	39	42	parallel
Strand 3	D	14	19	parallel
Strand 4	D	325	330	parallel
Strand 5	D	581	583	parallel

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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	50	54	first strand
Strand 2	D	71	75	anti-parallel

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There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	101	102	first strand
Strand 2	D	147	148	anti-parallel

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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	206	207	first strand
Strand 2	D	242	246	anti-parallel
Strand 3	D	253	255	anti-parallel

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There are 6 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	238	239	first strand
Strand 2	D	441	443	anti-parallel
Strand 3	D	452	456	anti-parallel
Strand 4	D	474	480	anti-parallel
Strand 5	D	388	395	anti-parallel
Strand 6	D	535	537	anti-parallel

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There are 6 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	238	239	first strand
Strand 2	D	441	443	anti-parallel
Strand 3	D	452	456	anti-parallel
Strand 4	D	474	480	anti-parallel
Strand 5	D	388	395	anti-parallel
Strand 6	D	544	545	anti-parallel

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There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	281	288	first strand
Strand 2	D	299	306	anti-parallel
Strand 3	D	320	323	anti-parallel

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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	490	498	first strand
Strand 2	D	504	509	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4MIF

Analysis of interatomic Contacts of Structural Units in PDB entry:
4MIF