Analysis of interatomic Contacts of Structural Units in PDB entry:
4MIT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4MIT entry

There are 8 chains in PDB entry 4MIT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 8MET 185
B
 PRO 8ASN 186
C
 GLU 6ASN 186
D
 GLU 6ASN 186
E
 GLU 4THR 43
F
 LEU 5LEU 42
G
 SER 1THR 43
H
 ASN 2THR 43
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 4MIT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
22 33Right-handed alpha
Helix 2
2
A
68 72Right-handed 310
Helix 3
3
A
74 79Right-handed 310
Helix 4
4
A
93 103Right-handed alpha
Helix 5
5
A
103 112Right-handed alpha
Helix 6
6
A
123 127Right-handed 310
Helix 7
7
A
129 139Right-handed alpha
Helix 8
8
A
145 156Right-handed alpha
Helix 9
9
A
171 185Right-handed alpha
Helix 10
10
B
22 33Right-handed alpha
Helix 11
11
B
68 72Right-handed 310
Helix 12
12
B
74 79Right-handed 310
Helix 13
13
B
93 103Right-handed alpha
Helix 14
14
B
103 112Right-handed alpha
Helix 15
15
B
123 127Right-handed 310
Helix 16
16
B
129 139Right-handed alpha
Helix 17
17
B
145 157Right-handed alpha
Helix 18
18
B
171 186Right-handed alpha
Helix 19
19
C
22 33Right-handed alpha
Helix 20
20
C
68 72Right-handed 310
Helix 21
21
C
74 79Right-handed 310
Helix 22
22
C
93 103Right-handed alpha
Helix 23
23
C
103 112Right-handed alpha
Helix 24
24
C
123 127Right-handed 310
Helix 25
25
C
129 138Right-handed alpha
Helix 26
26
C
145 156Right-handed alpha
Helix 27
27
C
171 186Right-handed alpha
Helix 28
28
D
22 33Right-handed alpha
Helix 29
29
D
68 72Right-handed 310
Helix 30
30
D
74 79Right-handed 310
Helix 31
31
D
93 103Right-handed alpha
Helix 32
32
D
103 112Right-handed alpha
Helix 33
33
D
123 127Right-handed 310
Helix 34
34
D
129 138Right-handed alpha
Helix 35
35
D
145 156Right-handed alpha
Helix 36
36
D
171 186Right-handed alpha
Helix 37
37
E
32 42Right-handed alpha
Helix 38
38
F
32 42Right-handed alpha
Helix 39
39
G
32 42Right-handed alpha
Helix 40
40
H
32 42Right-handed alpha
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There are 4 sheets in PDB entry 4MIT. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 163first strand
Strand 2
A
117 122parallel
Strand 3
A
84 90parallel
Strand 4
A
9 17parallel
Strand 5
A
56 65parallel
Strand 6
A
44 53anti-parallel
Strand 7
E
11 22anti-parallel
Strand 8
E
25 29anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
160 163first strand
Strand 2
B
117 122parallel
Strand 3
B
84 90parallel
Strand 4
B
9 17parallel
Strand 5
B
56 64parallel
Strand 6
B
44 53anti-parallel
Strand 7
F
11 20anti-parallel
Strand 8
F
27 29anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
160 163first strand
Strand 2
C
117 122parallel
Strand 3
C
84 90parallel
Strand 4
C
9 17parallel
Strand 5
C
56 64parallel
Strand 6
C
44 53anti-parallel
Strand 7
G
11 22anti-parallel
Strand 8
G
25 29anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
160 163first strand
Strand 2
D
117 122parallel
Strand 3
D
84 90parallel
Strand 4
D
9 17parallel
Strand 5
D
56 65parallel
Strand 6
D
44 53anti-parallel
Strand 7
H
11 22anti-parallel
Strand 8
H
25 29anti-parallel
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