Analysis of interatomic Contacts of Structural Units in PDB entry:
4MJ0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4MJ0 entry

There are 5 chains in PDB entry 4MJ0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 32	LYS 296
B	GLU 33	ASN 297
C	VAL 34	VAL 295
D	VAL 32	PRO 298
E	VAL 32	GLN 278

There are 27 helices in PDB entry 4MJ0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	81	85	Right-handed 310
Helix 2	2	A	121	127	Right-handed 310
Helix 3	3	A	183	188	Right-handed 310
Helix 4	4	A	204	206	Right-handed 310
Helix 5	5	A	254	256	Right-handed 310
Helix 6	6	B	74	78	Right-handed 310
Helix 7	7	B	81	85	Right-handed 310
Helix 8	8	B	121	127	Right-handed 310
Helix 9	9	B	183	188	Right-handed 310
Helix 10	10	B	204	206	Right-handed 310
Helix 11	11	B	254	256	Right-handed 310
Helix 12	12	C	74	78	Right-handed 310
Helix 13	13	C	81	85	Right-handed 310
Helix 14	14	C	121	127	Right-handed 310
Helix 15	15	C	183	188	Right-handed 310
Helix 16	16	C	204	206	Right-handed 310
Helix 17	17	D	74	78	Right-handed 310
Helix 18	18	D	81	85	Right-handed 310
Helix 19	19	D	121	127	Right-handed 310
Helix 20	20	D	183	188	Right-handed 310
Helix 21	21	D	204	206	Right-handed 310
Helix 22	22	D	254	256	Right-handed 310
Helix 23	23	E	74	78	Right-handed 310
Helix 24	24	E	81	85	Right-handed 310
Helix 25	25	E	121	127	Right-handed 310
Helix 26	26	E	183	188	Right-handed 310
Helix 27	27	E	204	206	Right-handed 310

There are 24 sheets in PDB entry 4MJ0. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	38	first strand
Strand 2	A	283	296	anti-parallel
Strand 3	A	44	51	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	38	first strand
Strand 2	A	283	296	anti-parallel
Strand 3	A	108	120	anti-parallel
Strand 4	A	242	243	anti-parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	89	94	first strand
Strand 2	A	258	271	anti-parallel
Strand 3	A	277	281	anti-parallel

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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	89	94	first strand
Strand 2	A	258	271	anti-parallel
Strand 3	A	148	155	anti-parallel
Strand 4	A	218	225	anti-parallel
Strand 5	E	233	237	anti-parallel

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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	194	196	first strand
Strand 2	A	160	163	anti-parallel
Strand 3	A	208	210	anti-parallel

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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	233	237	first strand
Strand 2	B	218	225	anti-parallel
Strand 3	B	148	155	anti-parallel
Strand 4	B	258	271	anti-parallel
Strand 5	B	89	94	anti-parallel

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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	233	237	first strand
Strand 2	B	218	225	anti-parallel
Strand 3	B	148	155	anti-parallel
Strand 4	B	258	271	anti-parallel
Strand 5	B	277	281	anti-parallel

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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	39	first strand
Strand 2	B	283	296	anti-parallel
Strand 3	B	43	51	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	39	first strand
Strand 2	B	283	296	anti-parallel
Strand 3	B	106	120	anti-parallel
Strand 4	B	242	243	anti-parallel

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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	194	196	first strand
Strand 2	B	160	163	anti-parallel
Strand 3	B	208	210	anti-parallel

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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	233	237	first strand
Strand 2	C	218	225	anti-parallel
Strand 3	C	148	155	anti-parallel
Strand 4	C	258	271	anti-parallel
Strand 5	C	89	94	anti-parallel

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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	233	237	first strand
Strand 2	C	218	225	anti-parallel
Strand 3	C	148	155	anti-parallel
Strand 4	C	258	271	anti-parallel
Strand 5	C	277	281	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	51	first strand
Strand 2	C	283	294	anti-parallel
Strand 3	C	108	120	anti-parallel
Strand 4	C	242	243	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	51	first strand
Strand 2	C	283	294	anti-parallel
Strand 3	C	108	120	anti-parallel
Strand 4	C	253	254	anti-parallel

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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	194	196	first strand
Strand 2	C	160	163	anti-parallel
Strand 3	C	208	210	anti-parallel

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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	233	237	first strand
Strand 2	D	218	225	anti-parallel
Strand 3	D	148	155	anti-parallel
Strand 4	D	258	271	anti-parallel
Strand 5	D	89	94	anti-parallel

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There are 5 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	233	237	first strand
Strand 2	D	218	225	anti-parallel
Strand 3	D	148	155	anti-parallel
Strand 4	D	258	271	anti-parallel
Strand 5	D	277	281	anti-parallel

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There are 5 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	33	38	first strand
Strand 2	D	44	51	anti-parallel
Strand 3	D	283	296	anti-parallel
Strand 4	D	106	120	anti-parallel
Strand 5	D	242	243	anti-parallel

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There are 3 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	194	196	first strand
Strand 2	D	160	163	anti-parallel
Strand 3	D	208	210	anti-parallel

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There are 5 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	233	237	first strand
Strand 2	E	218	225	anti-parallel
Strand 3	E	148	155	anti-parallel
Strand 4	E	258	271	anti-parallel
Strand 5	E	89	94	anti-parallel

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There are 5 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	233	237	first strand
Strand 2	E	218	225	anti-parallel
Strand 3	E	148	155	anti-parallel
Strand 4	E	258	271	anti-parallel
Strand 5	E	277	281	anti-parallel

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There are 3 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	34	37	first strand
Strand 2	E	283	296	anti-parallel
Strand 3	E	45	51	anti-parallel

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There are 4 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	34	37	first strand
Strand 2	E	283	296	anti-parallel
Strand 3	E	106	120	anti-parallel
Strand 4	E	242	243	anti-parallel

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There are 3 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	194	196	first strand
Strand 2	E	160	163	anti-parallel
Strand 3	E	208	210	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4MJ0

Analysis of interatomic Contacts of Structural Units in PDB entry:
4MJ0