Analysis of interatomic Contacts of Structural Units in PDB entry:
4MJ3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4MJ3 entry

There are 4 chains in PDB entry 4MJ3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MSE 1	PRO 302
B	MSE 1	ARG 303
C	MSE 1	ARG 303
D	MSE 1	ARG 303

There are 65 helices in PDB entry 4MJ3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	7	12	Right-handed 310
Helix 2	2	A	58	63	Right-handed 310
Helix 3	3	A	65	72	Right-handed alpha
Helix 4	4	A	92	96	Right-handed 310
Helix 5	5	A	97	113	Right-handed alpha
Helix 6	6	A	123	136	Right-handed alpha
Helix 7	7	A	158	171	Right-handed alpha
Helix 8	8	A	175	183	Right-handed alpha
Helix 9	9	A	189	198	Right-handed alpha
Helix 10	10	A	202	205	Right-handed 310
Helix 11	11	A	206	212	Right-handed alpha
Helix 12	12	A	213	216	Right-handed 310
Helix 13	13	A	224	236	Right-handed alpha
Helix 14	14	A	255	264	Right-handed alpha
Helix 15	15	A	265	268	Right-handed 310
Helix 16	16	A	281	301	Right-handed alpha
Helix 17	17	B	7	12	Right-handed 310
Helix 18	18	B	58	63	Right-handed 310
Helix 19	19	B	65	72	Right-handed alpha
Helix 20	20	B	92	96	Right-handed 310
Helix 21	21	B	97	113	Right-handed alpha
Helix 22	22	B	123	136	Right-handed alpha
Helix 23	23	B	158	171	Right-handed alpha
Helix 24	24	B	175	183	Right-handed alpha
Helix 25	25	B	189	198	Right-handed alpha
Helix 26	26	B	202	205	Right-handed 310
Helix 27	27	B	206	212	Right-handed alpha
Helix 28	28	B	213	216	Right-handed 310
Helix 29	29	B	224	236	Right-handed alpha
Helix 30	30	B	253	255	Right-handed 310
Helix 31	31	B	256	264	Right-handed alpha
Helix 32	32	B	265	268	Right-handed 310
Helix 33	33	B	281	301	Right-handed alpha
Helix 34	34	C	7	12	Right-handed 310
Helix 35	35	C	58	63	Right-handed 310
Helix 36	36	C	65	72	Right-handed alpha
Helix 37	37	C	92	96	Right-handed 310
Helix 38	38	C	97	113	Right-handed alpha
Helix 39	39	C	123	136	Right-handed alpha
Helix 40	40	C	158	171	Right-handed alpha
Helix 41	41	C	175	183	Right-handed alpha
Helix 42	42	C	189	198	Right-handed alpha
Helix 43	43	C	202	205	Right-handed 310
Helix 44	44	C	206	212	Right-handed alpha
Helix 45	45	C	213	216	Right-handed 310
Helix 46	46	C	224	236	Right-handed alpha
Helix 47	47	C	255	264	Right-handed alpha
Helix 48	48	C	265	268	Right-handed 310
Helix 49	49	C	281	301	Right-handed alpha
Helix 50	50	D	7	12	Right-handed 310
Helix 51	51	D	58	63	Right-handed 310
Helix 52	52	D	65	72	Right-handed alpha
Helix 53	53	D	92	96	Right-handed 310
Helix 54	54	D	97	113	Right-handed alpha
Helix 55	55	D	123	136	Right-handed alpha
Helix 56	56	D	158	171	Right-handed alpha
Helix 57	57	D	175	183	Right-handed alpha
Helix 58	58	D	189	198	Right-handed alpha
Helix 59	59	D	202	205	Right-handed 310
Helix 60	60	D	206	212	Right-handed alpha
Helix 61	61	D	213	216	Right-handed 310
Helix 62	62	D	224	236	Right-handed alpha
Helix 63	63	D	255	264	Right-handed alpha
Helix 64	64	D	265	268	Right-handed 310
Helix 65	65	D	281	301	Right-handed alpha

There are 8 sheets in PDB entry 4MJ3. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	4	first strand
Strand 2	A	89	90	anti-parallel

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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	22	27	first strand
Strand 2	A	33	41	anti-parallel
Strand 3	A	75	79	anti-parallel
Strand 4	A	48	52	parallel
Strand 5	A	117	121	parallel
Strand 6	A	140	145	parallel
Strand 7	A	242	244	parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	4	first strand
Strand 2	B	89	90	anti-parallel

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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	22	27	first strand
Strand 2	B	33	41	anti-parallel
Strand 3	B	75	79	anti-parallel
Strand 4	B	48	52	parallel
Strand 5	B	117	121	parallel
Strand 6	B	140	145	parallel
Strand 7	B	242	244	parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	4	first strand
Strand 2	C	89	90	anti-parallel

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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	22	27	first strand
Strand 2	C	33	41	anti-parallel
Strand 3	C	75	79	anti-parallel
Strand 4	C	48	52	parallel
Strand 5	C	117	121	parallel
Strand 6	C	140	145	parallel
Strand 7	C	242	244	parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	4	first strand
Strand 2	D	89	90	anti-parallel

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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	22	27	first strand
Strand 2	D	33	41	anti-parallel
Strand 3	D	75	79	anti-parallel
Strand 4	D	48	52	parallel
Strand 5	D	117	121	parallel
Strand 6	D	140	145	parallel
Strand 7	D	242	244	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4MJ3

Analysis of interatomic Contacts of Structural Units in PDB entry:
4MJ3