Analysis of interatomic Contacts of Structural Units in PDB entry:
4MJ4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4MJ4 entry

There is 1 chain in PDB entry 4MJ4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 27GLU 640
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 15 helices in PDB entry 4MJ4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
63 66Right-handed 310
Helix 2
2
A
67 78Right-handed alpha
Helix 3
3
A
92 97Right-handed 310
Helix 4
4
A
111 124Right-handed alpha
Helix 5
5
A
145 168Right-handed alpha
Helix 6
6
A
168 173Right-handed alpha
Helix 7
7
A
194 213Right-handed alpha
Helix 8
8
A
231 244Right-handed alpha
Helix 9
9
A
269 287Right-handed alpha
Helix 10
10
A
288 291Right-handed 310
Helix 11
11
A
310 314Right-handed 310
Helix 12
12
A
315 333Right-handed alpha
Helix 13
13
A
384 394Right-handed alpha
Helix 14
14
A
482 490Right-handed alpha
Helix 15
15
A
497 506Right-handed alpha
Back to top of page

There are 10 sheets in PDB entry 4MJ4. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
524 526first strand
Strand 2
A
449 461anti-parallel
Strand 3
A
30 42parallel
Strand 4
A
399 407anti-parallel
Strand 5
A
410 412anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
410 412first strand
Strand 2
A
399 407anti-parallel
Strand 3
A
418 425anti-parallel
Strand 4
A
435 442anti-parallel
Strand 5
A
534 541anti-parallel
Strand 6
A
470 477anti-parallel
Strand 7
A
516 517anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
516 517first strand
Strand 2
A
470 477anti-parallel
Strand 3
A
511 512anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
511 512first strand
Strand 2
A
470 477anti-parallel
Strand 3
A
534 541anti-parallel
Strand 4
A
435 442anti-parallel
Strand 5
A
418 425anti-parallel
Strand 6
A
399 407anti-parallel
Strand 7
A
30 42anti-parallel
Strand 8
A
449 461parallel
Strand 9
A
529 532anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
529 532first strand
Strand 2
A
449 461anti-parallel
Strand 3
A
524 526anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 52first strand
Strand 2
A
87 90parallel
Strand 3
A
127 131parallel
Strand 4
A
176 178parallel
Strand 5
A
217 223parallel
Strand 6
A
258 261parallel
Strand 7
A
295 297parallel
Strand 8
A
343 346parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 100first strand
Strand 2
A
108 110anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
366 371first strand
Strand 2
A
378 383anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
552 560first strand
Strand 2
A
563 569anti-parallel
Strand 3
A
604 607anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
593 594first strand
Strand 2
A
578 586anti-parallel
Strand 3
A
616 624anti-parallel
Strand 4
A
636 638anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il