Analysis of interatomic Contacts of Structural Units in PDB entry:
4MJ7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4MJ7 entry

There are 2 chains in PDB entry 4MJ7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 3SER 159
B
 GLN 3SER 159
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 4MJ7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 19Right-handed alpha
Helix 2
2
A
31 42Right-handed alpha
Helix 3
3
A
44 53Right-handed alpha
Helix 4
4
A
63 73Right-handed alpha
Helix 5
5
A
74 82Right-handed alpha
Helix 6
6
A
98 108Right-handed alpha
Helix 7
7
A
123 132Right-handed alpha
Helix 8
8
A
152 159Right-handed alpha
Helix 9
9
B
4 19Right-handed alpha
Helix 10
10
B
31 41Right-handed alpha
Helix 11
11
B
44 54Right-handed alpha
Helix 12
12
B
63 72Right-handed alpha
Helix 13
13
B
74 82Right-handed alpha
Helix 14
14
B
98 108Right-handed alpha
Helix 15
15
B
123 132Right-handed alpha
Helix 16
16
B
152 157Right-handed alpha
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There are 2 sheets in PDB entry 4MJ7. Click on sheet of interest to get list of strands forming it: A, B,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 87first strand
Strand 2
A
57 62parallel
Strand 3
A
26 30parallel
Strand 4
A
117 120parallel
Strand 5
A
138 141parallel
Strand 6
B
146 148anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 148first strand
Strand 2
B
138 142anti-parallel
Strand 3
B
117 120parallel
Strand 4
B
26 30parallel
Strand 5
B
57 62parallel
Strand 6
B
85 87parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il