Analysis of interatomic Contacts of Structural Units in PDB entry:
4MJM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4MJM entry

There are 4 chains in PDB entry 4MJM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 4GLU 470
B
 ALA 0LEU 469
C
 ALA 0GLU 470
D
 LYS 5HIS 472
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 4MJM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 14Right-handed 310
Helix 2
2
A
56 65Right-handed alpha
Helix 3
3
A
77 90Right-handed alpha
Helix 4
4
A
203 210Right-handed alpha
Helix 5
5
A
232 243Right-handed alpha
Helix 6
6
A
257 271Right-handed alpha
Helix 7
7
A
283 292Right-handed alpha
Helix 8
8
A
309 315Right-handed alpha
Helix 9
9
A
319 333Right-handed alpha
Helix 10
10
A
346 356Right-handed alpha
Helix 11
11
A
427 445Right-handed alpha
Helix 12
12
A
450 457Right-handed alpha
Helix 13
13
B
12 14Right-handed 310
Helix 14
14
B
56 67Right-handed alpha
Helix 15
15
B
77 90Right-handed alpha
Helix 16
16
B
204 210Right-handed alpha
Helix 17
17
B
233 243Right-handed alpha
Helix 18
18
B
257 271Right-handed alpha
Helix 19
19
B
283 294Right-handed alpha
Helix 20
20
B
319 332Right-handed alpha
Helix 21
21
B
333 335Right-handed 310
Helix 22
22
B
346 356Right-handed alpha
Helix 23
23
B
364 368Right-handed 310
Helix 24
24
B
427 438Right-handed alpha
Helix 25
25
B
438 447Right-handed alpha
Helix 26
26
B
450 457Right-handed alpha
Helix 27
27
B
464 469Right-handed alpha
Helix 28
28
C
12 14Right-handed 310
Helix 29
29
C
56 67Right-handed alpha
Helix 30
30
C
77 91Right-handed alpha
Helix 31
31
C
203 208Right-handed alpha
Helix 32
32
C
232 242Right-handed alpha
Helix 33
33
C
257 269Right-handed alpha
Helix 34
34
C
283 294Right-handed alpha
Helix 35
35
C
319 332Right-handed alpha
Helix 36
36
C
333 335Right-handed 310
Helix 37
37
C
346 357Right-handed alpha
Helix 38
38
C
364 368Right-handed 310
Helix 39
39
C
427 445Right-handed alpha
Helix 40
40
C
450 457Right-handed alpha
Helix 41
41
D
56 65Right-handed alpha
Helix 42
42
D
77 88Right-handed alpha
Helix 43
43
D
203 209Right-handed alpha
Helix 44
44
D
232 242Right-handed alpha
Helix 45
45
D
252 257Right-handed 310
Helix 46
46
D
258 271Right-handed alpha
Helix 47
47
D
283 292Right-handed alpha
Helix 48
48
D
319 334Right-handed alpha
Helix 49
49
D
346 356Right-handed alpha
Helix 50
50
D
427 447Right-handed alpha
Helix 51
51
D
450 458Right-handed alpha
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There are 15 sheets in PDB entry 4MJM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 9first strand
Strand 2
D
460 462parallel
Strand 3
D
16 18anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 18first strand
Strand 2
A
460 462anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 37first strand
Strand 2
A
40 42anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 70first strand
Strand 2
A
46 48parallel
Strand 3
A
360 363parallel
Strand 4
A
338 341parallel
Strand 5
A
297 300parallel
Strand 6
A
275 281parallel
Strand 7
A
247 251parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
376 378first strand
Strand 2
A
385 387anti-parallel
Strand 3
A
422 423anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 18first strand
Strand 2
B
460 462anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 35first strand
Strand 2
B
41 42anti-parallel
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There are 9 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 48first strand
Strand 2
B
69 72parallel
Strand 3
B
224 226parallel
Strand 4
B
247 250parallel
Strand 5
B
275 281parallel
Strand 6
B
297 300parallel
Strand 7
B
338 341parallel
Strand 8
B
360 363parallel
Strand 9
B
46 48parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
377 379first strand
Strand 2
B
384 386anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
16 18first strand
Strand 2
C
460 463anti-parallel
Strand 3
D
9 10parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
34 35first strand
Strand 2
C
41 42anti-parallel
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There are 9 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
46 48first strand
Strand 2
C
69 72parallel
Strand 3
C
223 227parallel
Strand 4
C
247 251parallel
Strand 5
C
275 281parallel
Strand 6
C
297 300parallel
Strand 7
C
338 341parallel
Strand 8
C
360 363parallel
Strand 9
C
46 48parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
34 37first strand
Strand 2
D
40 42anti-parallel
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There are 9 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
46 48first strand
Strand 2
D
70 72parallel
Strand 3
D
223 226parallel
Strand 4
D
247 250parallel
Strand 5
D
275 281parallel
Strand 6
D
297 300parallel
Strand 7
D
338 341parallel
Strand 8
D
358 363parallel
Strand 9
D
46 48parallel
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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
376 378first strand
Strand 2
D
385 387anti-parallel
Strand 3
D
422 423anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il