Analysis of interatomic Contacts of Structural Units in PDB entry:
4MJW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4MJW entry

There are 2 chains in PDB entry 4MJW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 532
B
 MET 1ALA 531
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 4MJW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 9Right-handed 310
Helix 2
2
A
22 33Right-handed alpha
Helix 3
3
A
52 57Right-handed alpha
Helix 4
4
A
58 65Right-handed 310
Helix 5
5
A
94 99Right-handed 310
Helix 6
6
A
108 118Right-handed alpha
Helix 7
7
A
125 136Right-handed alpha
Helix 8
8
A
164 177Right-handed alpha
Helix 9
9
A
209 215Right-handed alpha
Helix 10
10
A
216 219Right-handed 310
Helix 11
11
A
269 281Right-handed alpha
Helix 12
12
A
285 292Right-handed alpha
Helix 13
13
A
361 365Right-handed 310
Helix 14
14
A
411 429Right-handed alpha
Helix 15
15
A
430 434Right-handed 310
Helix 16
16
A
449 461Right-handed alpha
Helix 17
17
A
499 503Right-handed 310
Helix 18
18
A
511 531Right-handed alpha
Helix 19
19
B
5 9Right-handed 310
Helix 20
20
B
22 33Right-handed alpha
Helix 21
21
B
52 57Right-handed alpha
Helix 22
22
B
58 65Right-handed 310
Helix 23
23
B
94 99Right-handed 310
Helix 24
24
B
108 118Right-handed alpha
Helix 25
25
B
125 136Right-handed alpha
Helix 26
26
B
164 177Right-handed alpha
Helix 27
27
B
209 215Right-handed alpha
Helix 28
28
B
216 219Right-handed 310
Helix 29
29
B
269 281Right-handed alpha
Helix 30
30
B
285 292Right-handed alpha
Helix 31
31
B
361 365Right-handed 310
Helix 32
32
B
411 429Right-handed alpha
Helix 33
33
B
430 434Right-handed 310
Helix 34
34
B
449 461Right-handed alpha
Helix 35
35
B
499 503Right-handed 310
Helix 36
36
B
511 531Right-handed alpha
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There are 16 sheets in PDB entry 4MJW. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 3first strand
Strand 2
A
224 228parallel
Strand 3
A
40 44parallel
Strand 4
A
13 19parallel
Strand 5
A
256 267parallel
Strand 6
A
243 249anti-parallel
Strand 7
A
231 237anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 3first strand
Strand 2
A
224 228parallel
Strand 3
A
40 44parallel
Strand 4
A
13 19parallel
Strand 5
A
256 267parallel
Strand 6
A
495 497parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 74first strand
Strand 2
A
86 87anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 139first strand
Strand 2
A
155 159parallel
Strand 3
A
198 199anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 196first strand
Strand 2
A
333 337anti-parallel
Strand 3
A
348 353anti-parallel
Strand 4
A
372 379anti-parallel
Strand 5
A
315 319anti-parallel
Strand 6
A
437 442anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
283 284first strand
Strand 2
A
298 299parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
311 312first strand
Strand 2
A
462 463anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
387 389first strand
Strand 2
A
400 402anti-parallel
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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 3first strand
Strand 2
B
224 227parallel
Strand 3
B
40 43parallel
Strand 4
B
13 19parallel
Strand 5
B
256 267parallel
Strand 6
B
243 249anti-parallel
Strand 7
B
231 237anti-parallel
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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 3first strand
Strand 2
B
224 227parallel
Strand 3
B
40 43parallel
Strand 4
B
13 19parallel
Strand 5
B
256 267parallel
Strand 6
B
495 497parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
73 74first strand
Strand 2
B
86 87anti-parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
137 139first strand
Strand 2
B
155 159parallel
Strand 3
B
198 199anti-parallel
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There are 6 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
193 196first strand
Strand 2
B
333 337anti-parallel
Strand 3
B
348 353anti-parallel
Strand 4
B
372 379anti-parallel
Strand 5
B
315 319anti-parallel
Strand 6
B
437 442anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
283 284first strand
Strand 2
B
298 299parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
311 312first strand
Strand 2
B
462 463anti-parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
387 389first strand
Strand 2
B
400 402anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il