Analysis of interatomic Contacts of Structural Units in PDB entry:
4MKP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4MKP entry

There is 1 chain in PDB entry 4MKP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 162GLU 521
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 4MKP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
162 174Right-handed alpha
Helix 2
2
A
175 198Right-handed alpha
Helix 3
3
A
211 217Right-handed alpha
Helix 4
4
A
262 264Right-handed 310
Helix 5
5
A
272 288Right-handed alpha
Helix 6
6
A
331 335Right-handed 310
Helix 7
7
A
345 354Right-handed alpha
Helix 8
8
A
379 389Right-handed alpha
Helix 9
9
A
399 403Right-handed 310
Helix 10
10
A
405 423Right-handed alpha
Helix 11
11
A
434 449Right-handed alpha
Helix 12
12
A
451 458Right-handed 310
Helix 13
13
A
459 478Right-handed alpha
Helix 14
14
A
497 514Right-handed alpha
Helix 15
15
A
515 520Right-handed 310
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There are 3 sheets in PDB entry 4MKP. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 208first strand
Strand 2
A
225 233anti-parallel
Strand 3
A
316 326parallel
Strand 4
A
357 360anti-parallel
Strand 5
A
375 378anti-parallel
Strand 6
A
248 253anti-parallel
Strand 7
A
237 241anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 208first strand
Strand 2
A
225 233anti-parallel
Strand 3
A
316 326parallel
Strand 4
A
309 313anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
266 267first strand
Strand 2
A
270 271anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il