Analysis of interatomic Contacts of Structural Units in PDB entry:
4MKV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4MKV entry

There are 8 chains in PDB entry 4MKV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 12PHE 469
B
 GLY 12PHE 469
C
 GLY 12PHE 469
D
 GLY 12PHE 469
S
 MET 1TYR 123
T
 MET 1TYR 123
U
 MET 1TYR 123
V
 MET 1TYR 123
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are104 helices in PDB entry 4MKV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 25Right-handed alpha
Helix 2
2
A
49 61Right-handed alpha
Helix 3
3
A
69 75Right-handed 310
Helix 4
4
A
76 81Right-handed alpha
Helix 5
5
A
104 108Right-handed 310
Helix 6
6
A
112 122Right-handed alpha
Helix 7
7
A
123 127Right-handed 310
Helix 8
8
A
141 146Right-handed alpha
Helix 9
9
A
154 163Right-handed alpha
Helix 10
10
A
181 195Right-handed alpha
Helix 11
11
A
213 233Right-handed alpha
Helix 12
12
A
246 261Right-handed alpha
Helix 13
13
A
269 273Right-handed alpha
Helix 14
14
A
273 288Right-handed alpha
Helix 15
15
A
297 303Right-handed alpha
Helix 16
16
A
310 322Right-handed alpha
Helix 17
17
A
338 351Right-handed alpha
Helix 18
18
A
357 361Right-handed 310
Helix 19
19
A
383 385Right-handed 310
Helix 20
20
A
386 395Right-handed alpha
Helix 21
21
A
403 408Right-handed alpha
Helix 22
22
A
412 433Right-handed alpha
Helix 23
23
A
436 449Right-handed alpha
Helix 24
24
A
452 463Right-handed alpha
Helix 25
25
B
20 25Right-handed alpha
Helix 26
26
B
49 61Right-handed alpha
Helix 27
27
B
69 75Right-handed 310
Helix 28
28
B
76 81Right-handed alpha
Helix 29
29
B
104 108Right-handed 310
Helix 30
30
B
112 122Right-handed alpha
Helix 31
31
B
123 127Right-handed 310
Helix 32
32
B
141 146Right-handed alpha
Helix 33
33
B
154 163Right-handed alpha
Helix 34
34
B
181 195Right-handed alpha
Helix 35
35
B
213 233Right-handed alpha
Helix 36
36
B
246 261Right-handed alpha
Helix 37
37
B
269 273Right-handed alpha
Helix 38
38
B
273 288Right-handed alpha
Helix 39
39
B
297 303Right-handed alpha
Helix 40
40
B
310 322Right-handed alpha
Helix 41
41
B
338 351Right-handed alpha
Helix 42
42
B
357 361Right-handed 310
Helix 43
43
B
383 385Right-handed 310
Helix 44
44
B
386 395Right-handed alpha
Helix 45
45
B
403 408Right-handed alpha
Helix 46
46
B
412 433Right-handed alpha
Helix 47
47
B
436 450Right-handed alpha
Helix 48
48
B
452 463Right-handed alpha
Helix 49
49
C
20 25Right-handed alpha
Helix 50
50
C
49 61Right-handed alpha
Helix 51
51
C
69 75Right-handed 310
Helix 52
52
C
76 81Right-handed alpha
Helix 53
53
C
104 108Right-handed 310
Helix 54
54
C
112 122Right-handed alpha
Helix 55
55
C
123 127Right-handed 310
Helix 56
56
C
141 146Right-handed alpha
Helix 57
57
C
154 163Right-handed alpha
Helix 58
58
C
181 195Right-handed alpha
Helix 59
59
C
213 233Right-handed alpha
Helix 60
60
C
246 260Right-handed alpha
Helix 61
61
C
269 273Right-handed alpha
Helix 62
62
C
273 288Right-handed alpha
Helix 63
63
C
297 303Right-handed alpha
Helix 64
64
C
310 322Right-handed alpha
Helix 65
65
C
338 351Right-handed alpha
Helix 66
66
C
357 361Right-handed 310
Helix 67
67
C
383 385Right-handed 310
Helix 68
68
C
386 395Right-handed alpha
Helix 69
69
C
403 408Right-handed alpha
Helix 70
70
C
412 433Right-handed alpha
Helix 71
71
C
436 450Right-handed alpha
Helix 72
72
C
452 463Right-handed alpha
Helix 73
73
D
20 25Right-handed alpha
Helix 74
74
D
49 61Right-handed alpha
Helix 75
75
D
69 75Right-handed 310
Helix 76
76
D
76 81Right-handed alpha
Helix 77
77
D
104 108Right-handed 310
Helix 78
78
D
112 122Right-handed alpha
Helix 79
79
D
123 127Right-handed 310
Helix 80
80
D
141 146Right-handed alpha
Helix 81
81
D
154 163Right-handed alpha
Helix 82
82
D
181 195Right-handed alpha
Helix 83
83
D
213 233Right-handed alpha
Helix 84
84
D
246 261Right-handed alpha
Helix 85
85
D
269 273Right-handed alpha
Helix 86
86
D
273 288Right-handed alpha
Helix 87
87
D
297 303Right-handed alpha
Helix 88
88
D
310 322Right-handed alpha
Helix 89
89
D
338 351Right-handed alpha
Helix 90
90
D
357 361Right-handed 310
Helix 91
91
D
383 385Right-handed 310
Helix 92
92
D
386 395Right-handed alpha
Helix 93
93
D
403 408Right-handed alpha
Helix 94
94
D
412 433Right-handed alpha
Helix 95
95
D
436 450Right-handed alpha
Helix 96
96
D
452 463Right-handed alpha
Helix 97
97
S
22 36Right-handed alpha
Helix 98
98
S
79 94Right-handed alpha
Helix 99
99
T
22 36Right-handed alpha
Helix 100
100
T
79 94Right-handed alpha
Helix 101
101
U
22 36Right-handed alpha
Helix 102
102
U
79 94Right-handed alpha
Helix 103
103
V
22 36Right-handed alpha
Helix 104
104
V
79 94Right-handed alpha
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There are 16 sheets in PDB entry 4MKV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 89first strand
Strand 2
A
97 103anti-parallel
Strand 3
A
36 44anti-parallel
Strand 4
A
130 139anti-parallel
Strand 5
A
308 309parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 171first strand
Strand 2
A
399 401parallel
Strand 3
A
375 379parallel
Strand 4
A
325 327parallel
Strand 5
A
290 294parallel
Strand 6
A
264 268parallel
Strand 7
A
237 241parallel
Strand 8
A
199 201parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
353 354first strand
Strand 2
A
366 367anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
83 89first strand
Strand 2
B
97 103anti-parallel
Strand 3
B
36 44anti-parallel
Strand 4
B
130 139anti-parallel
Strand 5
B
308 309parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
169 171first strand
Strand 2
B
399 401parallel
Strand 3
B
375 379parallel
Strand 4
B
325 327parallel
Strand 5
B
290 294parallel
Strand 6
B
264 268parallel
Strand 7
B
237 241parallel
Strand 8
B
199 201parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
353 354first strand
Strand 2
B
366 367anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
83 89first strand
Strand 2
C
97 103anti-parallel
Strand 3
C
36 44anti-parallel
Strand 4
C
130 139anti-parallel
Strand 5
C
308 309parallel
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There are 8 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
169 171first strand
Strand 2
C
399 401parallel
Strand 3
C
375 379parallel
Strand 4
C
325 327parallel
Strand 5
C
290 294parallel
Strand 6
C
264 268parallel
Strand 7
C
237 241parallel
Strand 8
C
199 201parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
353 354first strand
Strand 2
C
366 367anti-parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
83 89first strand
Strand 2
D
97 103anti-parallel
Strand 3
D
36 44anti-parallel
Strand 4
D
130 139anti-parallel
Strand 5
D
308 309parallel
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There are 8 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
169 171first strand
Strand 2
D
399 401parallel
Strand 3
D
375 379parallel
Strand 4
D
325 327parallel
Strand 5
D
290 294parallel
Strand 6
D
264 268parallel
Strand 7
D
237 241parallel
Strand 8
D
199 201parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
353 354first strand
Strand 2
D
366 367anti-parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
S
68 70first strand
Strand 2
S
39 45anti-parallel
Strand 3
S
98 105anti-parallel
Strand 4
S
110 118anti-parallel
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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
T
68 70first strand
Strand 2
T
39 45anti-parallel
Strand 3
T
98 105anti-parallel
Strand 4
T
110 118anti-parallel
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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
U
68 70first strand
Strand 2
U
39 45anti-parallel
Strand 3
U
98 105anti-parallel
Strand 4
U
110 118anti-parallel
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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
V
68 70first strand
Strand 2
V
39 45anti-parallel
Strand 3
V
98 105anti-parallel
Strand 4
V
110 118anti-parallel
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