Analysis of interatomic Contacts of Structural Units in PDB entry:
4MKZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4MKZ entry

There is 1 chain in PDB entry 4MKZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 343
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 4MKZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 27Right-handed alpha
Helix 2
2
A
40 52Right-handed alpha
Helix 3
3
A
59 67Right-handed alpha
Helix 4
4
A
77 79Right-handed 310
Helix 5
5
A
80 91Right-handed alpha
Helix 6
6
A
104 117Right-handed alpha
Helix 7
7
A
127 131Right-handed 310
Helix 8
8
A
132 144Right-handed alpha
Helix 9
9
A
163 168Right-handed alpha
Helix 10
10
A
178 196Right-handed alpha
Helix 11
11
A
211 215Right-handed 310
Helix 12
12
A
286 291Right-handed alpha
Helix 13
13
A
291 309Right-handed alpha
Helix 14
14
A
315 336Right-handed alpha
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There are 3 sheets in PDB entry 4MKZ. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 57first strand
Strand 2
A
31 37parallel
Strand 3
A
6 11parallel
Strand 4
A
71 74parallel
Strand 5
A
94 97parallel
Strand 6
A
123 125parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
259 262first strand
Strand 2
A
248 255anti-parallel
Strand 3
A
150 160anti-parallel
Strand 4
A
234 243parallel
Strand 5
A
222 229anti-parallel
Strand 6
A
199 207anti-parallel
Strand 7
A
339 340anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
273 275first strand
Strand 2
A
278 280anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il