Analysis of interatomic Contacts of Structural Units in PDB entry:
4ML1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4ML1 entry

There are 4 chains in PDB entry 4ML1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 11SER 212
B
 ARG 10ALA 213
C
 ALA 12ALA 213
D
 ALA 11SER 46
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 38 helices in PDB entry 4ML1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
60 70Right-handed alpha
Helix 2
2
A
79 83Right-handed 310
Helix 3
3
A
103 115Right-handed alpha
Helix 4
4
A
132 144Right-handed alpha
Helix 5
5
A
146 148Right-handed 310
Helix 6
6
A
149 156Right-handed alpha
Helix 7
7
A
158 162Right-handed 310
Helix 8
8
A
174 184Right-handed alpha
Helix 9
9
A
205 211Right-handed alpha
Helix 10
10
B
60 70Right-handed alpha
Helix 11
11
B
79 83Right-handed 310
Helix 12
12
B
103 114Right-handed alpha
Helix 13
13
B
115 117Right-handed 310
Helix 14
14
B
132 143Right-handed alpha
Helix 15
15
B
146 148Right-handed 310
Helix 16
16
B
149 156Right-handed alpha
Helix 17
17
B
158 162Right-handed 310
Helix 18
18
B
174 184Right-handed alpha
Helix 19
19
B
205 211Right-handed alpha
Helix 20
20
C
60 70Right-handed alpha
Helix 21
21
C
79 83Right-handed 310
Helix 22
22
C
103 114Right-handed alpha
Helix 23
23
C
115 117Right-handed 310
Helix 24
24
C
132 143Right-handed alpha
Helix 25
25
C
146 148Right-handed 310
Helix 26
26
C
149 156Right-handed alpha
Helix 27
27
C
158 162Right-handed 310
Helix 28
28
C
174 184Right-handed alpha
Helix 29
29
C
205 212Right-handed alpha
Helix 30
30
D
60 70Right-handed alpha
Helix 31
31
D
73 77Right-handed 310
Helix 32
32
D
79 83Right-handed 310
Helix 33
33
D
103 115Right-handed alpha
Helix 34
34
D
132 143Right-handed alpha
Helix 35
35
D
149 156Right-handed alpha
Helix 36
36
D
158 162Right-handed 310
Helix 37
37
D
174 184Right-handed alpha
Helix 38
38
D
205 212Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 4ML1. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 20first strand
Strand 2
B
25 30anti-parallel
Strand 3
B
33 38anti-parallel
Strand 4
B
43 51anti-parallel
Strand 5
A
43 51anti-parallel
Strand 6
A
33 38anti-parallel
Strand 7
A
25 30anti-parallel
Strand 8
B
14 20anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 58first strand
Strand 2
A
43 51anti-parallel
Strand 3
B
43 51anti-parallel
Strand 4
B
56 58anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 88first strand
Strand 2
A
120 126anti-parallel
Strand 3
A
93 99parallel
Strand 4
A
190 192anti-parallel
Strand 5
A
198 200anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
85 88first strand
Strand 2
B
120 126anti-parallel
Strand 3
B
93 99parallel
Strand 4
B
190 192anti-parallel
Strand 5
B
198 200anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
14 20first strand
Strand 2
D
25 30anti-parallel
Strand 3
D
33 38anti-parallel
Strand 4
D
43 51anti-parallel
Strand 5
C
43 51anti-parallel
Strand 6
C
33 38anti-parallel
Strand 7
C
25 30anti-parallel
Strand 8
D
14 19anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
56 58first strand
Strand 2
C
43 51anti-parallel
Strand 3
D
43 51anti-parallel
Strand 4
D
56 58anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
85 89first strand
Strand 2
C
120 126anti-parallel
Strand 3
C
93 99parallel
Strand 4
C
190 192anti-parallel
Strand 5
C
198 200anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
85 89first strand
Strand 2
D
120 126anti-parallel
Strand 3
D
93 99parallel
Strand 4
D
190 192anti-parallel
Strand 5
D
198 200anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il