Analysis of interatomic Contacts of Structural Units in PDB entry:
4ML8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4ML8 entry

There are 4 chains in PDB entry 4ML8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 29	PRO 516
B	ASP 29	LEU 515
C	ASP 29	PRO 516
D	ASP 29	SER 514

There are 86 helices in PDB entry 4ML8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	31	37	Right-handed alpha
Helix 2	2	A	48	53	Right-handed 310
Helix 3	3	A	71	85	Right-handed alpha
Helix 4	4	A	117	119	Right-handed 310
Helix 5	5	A	138	148	Right-handed alpha
Helix 6	6	A	163	169	Right-handed alpha
Helix 7	7	A	176	181	Right-handed alpha
Helix 8	8	A	182	185	Right-handed 310
Helix 9	9	A	207	215	Right-handed alpha
Helix 10	10	A	247	261	Right-handed alpha
Helix 11	11	A	291	296	Right-handed alpha
Helix 12	12	A	315	317	Right-handed 310
Helix 13	13	A	318	331	Right-handed alpha
Helix 14	14	A	336	339	Right-handed 310
Helix 15	15	A	347	364	Right-handed alpha
Helix 16	16	A	382	393	Right-handed alpha
Helix 17	17	A	411	413	Right-handed 310
Helix 18	18	A	444	462	Right-handed alpha
Helix 19	19	A	475	484	Right-handed alpha
Helix 20	20	A	486	498	Right-handed alpha
Helix 21	21	A	504	508	Right-handed 310
Helix 22	22	B	48	53	Right-handed 310
Helix 23	23	B	71	85	Right-handed alpha
Helix 24	24	B	117	119	Right-handed 310
Helix 25	25	B	138	147	Right-handed alpha
Helix 26	26	B	163	169	Right-handed alpha
Helix 27	27	B	176	181	Right-handed alpha
Helix 28	28	B	182	185	Right-handed 310
Helix 29	29	B	207	215	Right-handed alpha
Helix 30	30	B	247	261	Right-handed alpha
Helix 31	31	B	278	284	Right-handed alpha
Helix 32	32	B	291	297	Right-handed alpha
Helix 33	33	B	315	317	Right-handed 310
Helix 34	34	B	318	332	Right-handed alpha
Helix 35	35	B	347	352	Right-handed alpha
Helix 36	36	B	352	364	Right-handed alpha
Helix 37	37	B	382	391	Right-handed alpha
Helix 38	38	B	411	413	Right-handed 310
Helix 39	39	B	444	462	Right-handed alpha
Helix 40	40	B	475	484	Right-handed alpha
Helix 41	41	B	486	498	Right-handed alpha
Helix 42	42	B	504	508	Right-handed 310
Helix 43	43	C	31	37	Right-handed alpha
Helix 44	44	C	48	53	Right-handed 310
Helix 45	45	C	71	85	Right-handed alpha
Helix 46	46	C	117	119	Right-handed 310
Helix 47	47	C	138	148	Right-handed alpha
Helix 48	48	C	163	169	Right-handed alpha
Helix 49	49	C	176	181	Right-handed alpha
Helix 50	50	C	182	185	Right-handed 310
Helix 51	51	C	207	215	Right-handed alpha
Helix 52	52	C	247	259	Right-handed alpha
Helix 53	53	C	291	297	Right-handed alpha
Helix 54	54	C	315	317	Right-handed 310
Helix 55	55	C	318	331	Right-handed alpha
Helix 56	56	C	336	339	Right-handed 310
Helix 57	57	C	347	352	Right-handed alpha
Helix 58	58	C	352	364	Right-handed alpha
Helix 59	59	C	382	391	Right-handed alpha
Helix 60	60	C	411	413	Right-handed 310
Helix 61	61	C	444	462	Right-handed alpha
Helix 62	62	C	475	484	Right-handed alpha
Helix 63	63	C	486	498	Right-handed alpha
Helix 64	64	C	504	508	Right-handed 310
Helix 65	65	D	31	37	Right-handed alpha
Helix 66	66	D	48	52	Right-handed 310
Helix 67	67	D	71	84	Right-handed alpha
Helix 68	68	D	117	119	Right-handed 310
Helix 69	69	D	138	148	Right-handed alpha
Helix 70	70	D	163	169	Right-handed alpha
Helix 71	71	D	176	181	Right-handed alpha
Helix 72	72	D	182	185	Right-handed 310
Helix 73	73	D	207	215	Right-handed alpha
Helix 74	74	D	247	261	Right-handed alpha
Helix 75	75	D	278	284	Right-handed alpha
Helix 76	76	D	315	317	Right-handed 310
Helix 77	77	D	318	332	Right-handed alpha
Helix 78	78	D	347	352	Right-handed alpha
Helix 79	79	D	352	364	Right-handed alpha
Helix 80	80	D	382	392	Right-handed alpha
Helix 81	81	D	397	401	Right-handed 310
Helix 82	82	D	411	413	Right-handed 310
Helix 83	83	D	444	462	Right-handed alpha
Helix 84	84	D	475	484	Right-handed alpha
Helix 85	85	D	486	498	Right-handed alpha
Helix 86	86	D	504	508	Right-handed 310

There are 18 sheets in PDB entry 4ML8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	44	first strand
Strand 2	A	65	68	anti-parallel
Strand 3	A	112	115	parallel
Strand 4	A	93	96	parallel

Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	125	127	first strand
Strand 2	A	130	134	anti-parallel
Strand 3	A	222	233	anti-parallel
Strand 4	A	151	153	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	125	127	first strand
Strand 2	A	130	134	anti-parallel
Strand 3	A	222	233	anti-parallel
Strand 4	A	187	194	anti-parallel
Strand 5	A	199	202	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	273	first strand
Strand 2	A	305	314	anti-parallel
Strand 3	A	237	245	anti-parallel
Strand 4	A	341	346	anti-parallel
Strand 5	A	288	289	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	403	409	first strand
Strand 2	A	426	432	anti-parallel
Strand 3	A	374	379	anti-parallel
Strand 4	A	467	468	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	42	44	first strand
Strand 2	B	65	68	anti-parallel
Strand 3	B	112	115	parallel
Strand 4	B	93	96	parallel

Back to list of sheets
Back to top of page

There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	125	127	first strand
Strand 2	B	130	134	anti-parallel
Strand 3	B	222	233	anti-parallel
Strand 4	B	151	153	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	125	127	first strand
Strand 2	B	130	134	anti-parallel
Strand 3	B	222	233	anti-parallel
Strand 4	B	187	194	anti-parallel
Strand 5	B	199	202	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	288	289	first strand
Strand 2	B	336	346	anti-parallel
Strand 3	B	237	245	anti-parallel
Strand 4	B	305	314	anti-parallel
Strand 5	B	267	273	anti-parallel
Strand 6	B	403	409	anti-parallel
Strand 7	B	426	432	anti-parallel
Strand 8	B	374	379	anti-parallel
Strand 9	B	467	468	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	44	first strand
Strand 2	C	65	68	anti-parallel
Strand 3	C	112	115	parallel
Strand 4	C	93	96	parallel

Back to list of sheets
Back to top of page

There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	125	127	first strand
Strand 2	C	130	134	anti-parallel
Strand 3	C	222	233	anti-parallel
Strand 4	C	151	153	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	125	127	first strand
Strand 2	C	130	134	anti-parallel
Strand 3	C	222	233	anti-parallel
Strand 4	C	187	194	anti-parallel
Strand 5	C	199	202	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	288	289	first strand
Strand 2	C	341	346	anti-parallel
Strand 3	C	237	245	anti-parallel
Strand 4	C	305	314	anti-parallel
Strand 5	C	267	273	anti-parallel
Strand 6	C	403	409	anti-parallel
Strand 7	C	426	432	anti-parallel
Strand 8	C	374	379	anti-parallel
Strand 9	C	467	468	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	42	44	first strand
Strand 2	D	65	68	anti-parallel
Strand 3	D	112	115	parallel
Strand 4	D	93	96	parallel

Back to list of sheets
Back to top of page

There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	125	127	first strand
Strand 2	D	130	134	anti-parallel
Strand 3	D	222	233	anti-parallel
Strand 4	D	151	153	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	125	127	first strand
Strand 2	D	130	134	anti-parallel
Strand 3	D	222	233	anti-parallel
Strand 4	D	187	194	anti-parallel
Strand 5	D	199	202	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	267	274	first strand
Strand 2	D	304	314	anti-parallel
Strand 3	D	237	245	anti-parallel
Strand 4	D	336	346	anti-parallel
Strand 5	D	288	289	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	403	409	first strand
Strand 2	D	426	432	anti-parallel
Strand 3	D	374	379	anti-parallel
Strand 4	D	467	468	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4ML8

Analysis of interatomic Contacts of Structural Units in PDB entry:
4ML8