Analysis of interatomic Contacts of Structural Units in PDB entry:
4ML9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4ML9 entry

There are 2 chains in PDB entry 4ML9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN -1LYS 281
B
 GLY 4SER 278
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 4ML9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 24Right-handed alpha
Helix 2
2
A
33 38Right-handed alpha
Helix 3
3
A
38 48Right-handed alpha
Helix 4
4
A
56 64Right-handed alpha
Helix 5
5
A
65 69Right-handed 310
Helix 6
6
A
71 79Right-handed alpha
Helix 7
7
A
80 82Right-handed 310
Helix 8
8
A
83 99Right-handed alpha
Helix 9
9
A
121 131Right-handed alpha
Helix 10
10
A
142 156Right-handed alpha
Helix 11
11
A
179 194Right-handed alpha
Helix 12
12
A
215 229Right-handed alpha
Helix 13
13
A
243 250Right-handed alpha
Helix 14
14
A
258 279Right-handed alpha
Helix 15
15
B
5 24Right-handed alpha
Helix 16
16
B
33 38Right-handed alpha
Helix 17
17
B
38 48Right-handed alpha
Helix 18
18
B
56 64Right-handed alpha
Helix 19
19
B
65 69Right-handed 310
Helix 20
20
B
71 79Right-handed alpha
Helix 21
21
B
80 82Right-handed 310
Helix 22
22
B
83 99Right-handed alpha
Helix 23
23
B
121 131Right-handed alpha
Helix 24
24
B
142 156Right-handed alpha
Helix 25
25
B
179 194Right-handed alpha
Helix 26
26
B
215 227Right-handed alpha
Helix 27
27
B
243 249Right-handed alpha
Helix 28
28
B
258 278Right-handed alpha
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There are 2 sheets in PDB entry 4ML9. Click on sheet of interest to get list of strands forming it: A, B,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 176first strand
Strand 2
A
159 165parallel
Strand 3
A
197 201parallel
Strand 4
A
233 236parallel
Strand 5
A
254 257parallel
Strand 6
A
28 31parallel
Strand 7
A
52 53parallel
Strand 8
A
103 106parallel
Strand 9
A
135 138parallel
Strand 10
A
159 165parallel
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There are 10 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
175 176first strand
Strand 2
B
159 165parallel
Strand 3
B
197 201parallel
Strand 4
B
233 236parallel
Strand 5
B
254 257parallel
Strand 6
B
28 31parallel
Strand 7
B
52 53parallel
Strand 8
B
103 106parallel
Strand 9
B
135 138parallel
Strand 10
B
159 165parallel
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