Analysis of interatomic Contacts of Structural Units in PDB entry:
4MLJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4MLJ entry

There are 8 chains in PDB entry 4MLJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 4VAL 165
A
 GLU 167PHE 298
B
 MET 1VAL 165
B
 GLU 167PHE 298
C
 ASP 2VAL 165
C
 GLU 167PHE 298
D
 ASP 2VAL 165
D
 GLU 167PHE 298
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 62 helices in PDB entry 4MLJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
23 37Right-handed alpha
Helix 2
2
A
50 54Right-handed 310
Helix 3
3
A
55 71Right-handed alpha
Helix 4
4
A
85 99Right-handed alpha
Helix 5
5
A
115 130Right-handed alpha
Helix 6
6
A
139 144Right-handed alpha
Helix 7
7
A
148 159Right-handed alpha
Helix 8
8
A
171 182Right-handed alpha
Helix 9
9
A
191 193Right-handed 310
Helix 10
10
A
194 201Right-handed alpha
Helix 11
11
A
209 213Right-handed 310
Helix 12
12
A
214 227Right-handed alpha
Helix 13
13
A
229 240Right-handed alpha
Helix 14
14
A
240 247Right-handed alpha
Helix 15
15
A
253 263Right-handed alpha
Helix 16
16
A
279 291Right-handed alpha
Helix 17
17
B
23 37Right-handed alpha
Helix 18
18
B
50 54Right-handed 310
Helix 19
19
B
55 71Right-handed alpha
Helix 20
20
B
85 99Right-handed alpha
Helix 21
21
B
115 130Right-handed alpha
Helix 22
22
B
139 144Right-handed alpha
Helix 23
23
B
148 159Right-handed alpha
Helix 24
24
B
171 182Right-handed alpha
Helix 25
25
B
191 193Right-handed 310
Helix 26
26
B
194 201Right-handed alpha
Helix 27
27
B
209 213Right-handed 310
Helix 28
28
B
214 227Right-handed alpha
Helix 29
29
B
229 247Right-handed alpha
Helix 30
30
B
253 263Right-handed alpha
Helix 31
31
B
279 291Right-handed alpha
Helix 32
32
C
23 37Right-handed alpha
Helix 33
33
C
50 54Right-handed 310
Helix 34
34
C
55 71Right-handed alpha
Helix 35
35
C
85 99Right-handed alpha
Helix 36
36
C
115 128Right-handed alpha
Helix 37
37
C
139 144Right-handed alpha
Helix 38
38
C
148 159Right-handed alpha
Helix 39
39
C
171 182Right-handed alpha
Helix 40
40
C
191 193Right-handed 310
Helix 41
41
C
194 201Right-handed alpha
Helix 42
42
C
209 213Right-handed 310
Helix 43
43
C
214 227Right-handed alpha
Helix 44
44
C
229 247Right-handed alpha
Helix 45
45
C
253 263Right-handed alpha
Helix 46
46
C
279 291Right-handed alpha
Helix 47
47
D
23 37Right-handed alpha
Helix 48
48
D
50 54Right-handed 310
Helix 49
49
D
55 71Right-handed alpha
Helix 50
50
D
85 99Right-handed alpha
Helix 51
51
D
115 130Right-handed alpha
Helix 52
52
D
139 144Right-handed alpha
Helix 53
53
D
148 159Right-handed alpha
Helix 54
54
D
171 182Right-handed alpha
Helix 55
55
D
191 193Right-handed 310
Helix 56
56
D
194 201Right-handed alpha
Helix 57
57
D
209 213Right-handed 310
Helix 58
58
D
214 227Right-handed alpha
Helix 59
59
D
229 240Right-handed alpha
Helix 60
60
D
240 247Right-handed alpha
Helix 61
61
D
253 263Right-handed alpha
Helix 62
62
D
279 291Right-handed alpha
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There are 8 sheets in PDB entry 4MLJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 12first strand
Strand 2
A
41 43parallel
Strand 3
A
76 80parallel
Strand 4
A
103 107parallel
Strand 5
A
134 138parallel
Strand 6
A
162 167parallel
Strand 7
A
186 189parallel
Strand 8
A
205 208parallel
Strand 9
A
8 12parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 18first strand
Strand 2
A
21 22anti-parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 12first strand
Strand 2
B
41 43parallel
Strand 3
B
76 80parallel
Strand 4
B
103 107parallel
Strand 5
B
134 138parallel
Strand 6
B
162 167parallel
Strand 7
B
186 189parallel
Strand 8
B
205 208parallel
Strand 9
B
8 12parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
17 18first strand
Strand 2
B
21 22anti-parallel
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There are 9 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
8 12first strand
Strand 2
C
41 43parallel
Strand 3
C
76 80parallel
Strand 4
C
103 107parallel
Strand 5
C
134 138parallel
Strand 6
C
162 167parallel
Strand 7
C
186 189parallel
Strand 8
C
205 208parallel
Strand 9
C
8 12parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
17 18first strand
Strand 2
C
21 22anti-parallel
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There are 9 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
8 12first strand
Strand 2
D
41 43parallel
Strand 3
D
76 80parallel
Strand 4
D
103 107parallel
Strand 5
D
134 138parallel
Strand 6
D
162 167parallel
Strand 7
D
186 189parallel
Strand 8
D
205 208parallel
Strand 9
D
8 12parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
17 18first strand
Strand 2
D
21 22anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il