Analysis of interatomic Contacts of Structural Units in PDB entry:
4MLY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4MLY entry

There are 4 chains in PDB entry 4MLY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 12ALA 213
B
 ALA 12SER 212
C
 ALA 12ALA 213
D
 ALA 12ILE 49
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 4MLY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
60 70Right-handed alpha
Helix 2
2
A
73 77Right-handed 310
Helix 3
3
A
79 83Right-handed 310
Helix 4
4
A
103 114Right-handed alpha
Helix 5
5
A
115 117Right-handed 310
Helix 6
6
A
131 143Right-handed alpha
Helix 7
7
A
146 157Right-handed alpha
Helix 8
8
A
158 162Right-handed 310
Helix 9
9
A
174 184Right-handed alpha
Helix 10
10
A
205 212Right-handed alpha
Helix 11
11
B
60 70Right-handed alpha
Helix 12
12
B
79 83Right-handed 310
Helix 13
13
B
103 114Right-handed alpha
Helix 14
14
B
115 117Right-handed 310
Helix 15
15
B
131 143Right-handed alpha
Helix 16
16
B
149 156Right-handed alpha
Helix 17
17
B
158 162Right-handed 310
Helix 18
18
B
174 183Right-handed alpha
Helix 19
19
B
205 212Right-handed alpha
Helix 20
20
C
60 70Right-handed alpha
Helix 21
21
C
79 83Right-handed 310
Helix 22
22
C
103 115Right-handed alpha
Helix 23
23
C
131 143Right-handed alpha
Helix 24
24
C
149 156Right-handed alpha
Helix 25
25
C
158 162Right-handed 310
Helix 26
26
C
174 183Right-handed alpha
Helix 27
27
C
205 212Right-handed alpha
Helix 28
28
D
60 70Right-handed alpha
Helix 29
29
D
79 83Right-handed 310
Helix 30
30
D
103 115Right-handed alpha
Helix 31
31
D
131 143Right-handed alpha
Helix 32
32
D
149 156Right-handed alpha
Helix 33
33
D
158 162Right-handed 310
Helix 34
34
D
174 183Right-handed alpha
Helix 35
35
D
205 212Right-handed alpha
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There are 8 sheets in PDB entry 4MLY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 19first strand
Strand 2
D
25 30anti-parallel
Strand 3
D
33 38anti-parallel
Strand 4
D
43 51anti-parallel
Strand 5
A
43 51anti-parallel
Strand 6
A
33 38anti-parallel
Strand 7
A
25 30anti-parallel
Strand 8
D
16 19anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 58first strand
Strand 2
A
43 51anti-parallel
Strand 3
D
43 51anti-parallel
Strand 4
D
56 58anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 89first strand
Strand 2
A
120 126anti-parallel
Strand 3
A
93 99parallel
Strand 4
A
190 192anti-parallel
Strand 5
A
198 200anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
14 20first strand
Strand 2
C
25 30anti-parallel
Strand 3
C
33 38anti-parallel
Strand 4
C
43 51anti-parallel
Strand 5
B
43 51anti-parallel
Strand 6
B
33 38anti-parallel
Strand 7
B
25 30anti-parallel
Strand 8
C
14 19anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 58first strand
Strand 2
B
43 51anti-parallel
Strand 3
C
43 51anti-parallel
Strand 4
C
56 58anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
85 89first strand
Strand 2
B
120 126anti-parallel
Strand 3
B
93 99parallel
Strand 4
B
190 192anti-parallel
Strand 5
B
198 200anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
85 89first strand
Strand 2
C
120 126anti-parallel
Strand 3
C
93 99parallel
Strand 4
C
190 192anti-parallel
Strand 5
C
198 200anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
85 89first strand
Strand 2
D
120 126anti-parallel
Strand 3
D
93 99parallel
Strand 4
D
190 192anti-parallel
Strand 5
D
198 200anti-parallel
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