Analysis of interatomic Contacts of Structural Units in PDB entry:
4MMO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4MMO entry

There are 2 chains in PDB entry 4MMO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 437
B
 LEU 8GLY 260
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 29 helices in PDB entry 4MMO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 13Right-handed alpha
Helix 2
2
A
23 40Right-handed alpha
Helix 3
3
A
79 83Right-handed 310
Helix 4
4
A
105 122Right-handed alpha
Helix 5
5
A
136 140Right-handed 310
Helix 6
6
A
143 150Right-handed alpha
Helix 7
7
A
199 204Right-handed 310
Helix 8
8
A
206 219Right-handed alpha
Helix 9
9
A
238 248Right-handed alpha
Helix 10
10
A
251 260Right-handed alpha
Helix 11
11
A
268 279Right-handed alpha
Helix 12
12
A
317 332Right-handed alpha
Helix 13
13
A
353 368Right-handed alpha
Helix 14
14
A
382 389Right-handed alpha
Helix 15
15
A
403 407Right-handed 310
Helix 16
16
A
417 434Right-handed alpha
Helix 17
17
B
9 14Right-handed alpha
Helix 18
18
B
23 40Right-handed alpha
Helix 19
19
B
107 122Right-handed alpha
Helix 20
20
B
144 150Right-handed alpha
Helix 21
21
B
199 204Right-handed 310
Helix 22
22
B
206 217Right-handed alpha
Helix 23
23
B
238 248Right-handed alpha
Helix 24
24
B
251 260Right-handed alpha
Helix 25
25
B
268 279Right-handed alpha
Helix 26
26
B
317 332Right-handed alpha
Helix 27
27
B
353 368Right-handed alpha
Helix 28
28
B
382 389Right-handed alpha
Helix 29
29
B
416 437Right-handed alpha
Back to top of page

There are 10 sheets in PDB entry 4MMO. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 46first strand
Strand 2
A
53 58anti-parallel
Strand 3
A
128 134anti-parallel
Strand 4
A
65 71parallel
Strand 5
A
159 161parallel
Strand 6
A
395 396parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 93first strand
Strand 2
A
96 98anti-parallel
Strand 3
A
414 416anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 176first strand
Strand 2
A
372 374parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
178 179first strand
Strand 2
A
347 348anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
337 344first strand
Strand 2
A
181 190anti-parallel
Strand 3
A
303 312anti-parallel
Strand 4
A
283 290anti-parallel
Strand 5
B
283 290anti-parallel
Strand 6
B
303 312anti-parallel
Strand 7
B
181 190anti-parallel
Strand 8
B
337 344anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
196 197first strand
Strand 2
A
299 300anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 46first strand
Strand 2
B
53 58anti-parallel
Strand 3
B
128 134anti-parallel
Strand 4
B
65 71parallel
Strand 5
B
159 161parallel
Strand 6
B
394 396parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
174 176first strand
Strand 2
B
372 374parallel
Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
178 179first strand
Strand 2
B
347 348anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
196 197first strand
Strand 2
B
299 300anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il