Analysis of interatomic Contacts of Structural Units in PDB entry:
4MMP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4MMP entry

There is 1 chain in PDB entry 4MMP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 2LEU 309
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 4MMP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 34Right-handed alpha
Helix 2
2
A
50 60Right-handed alpha
Helix 3
3
A
69 76Right-handed 310
Helix 4
4
A
77 85Right-handed 310
Helix 5
5
A
91 101Right-handed alpha
Helix 6
6
A
102 117Right-handed alpha
Helix 7
7
A
139 144Right-handed 310
Helix 8
8
A
153 163Right-handed alpha
Helix 9
9
A
171 173Right-handed 310
Helix 10
10
A
174 181Right-handed alpha
Helix 11
11
A
191 197Right-handed alpha
Helix 12
12
A
198 202Right-handed 310
Helix 13
13
A
222 228Right-handed alpha
Helix 14
14
A
229 265Right-handed alpha
Helix 15
15
A
274 309Right-handed alpha
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There are 3 sheets in PDB entry 4MMP. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 43first strand
Strand 2
A
5 10parallel
Strand 3
A
65 68parallel
Strand 4
A
213 221anti-parallel
Strand 5
A
118 133anti-parallel
Strand 6
A
186 190anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 43first strand
Strand 2
A
5 10parallel
Strand 3
A
65 68parallel
Strand 4
A
213 221anti-parallel
Strand 5
A
118 133anti-parallel
Strand 6
A
205 207anti-parallel
Strand 7
A
268 270parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 150first strand
Strand 2
A
166 169parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il