Analysis of interatomic Contacts of Structural Units in PDB entry:
4MMV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4MMV entry

There are 2 chains in PDB entry 4MMV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 26THR 103
B
 PHE 137LEU 544
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 4MMV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
76 82Right-handed alpha
Helix 2
2
A
83 96Right-handed alpha
Helix 3
3
B
138 142Right-handed 310
Helix 4
4
B
148 158Right-handed alpha
Helix 5
5
B
161 169Right-handed alpha
Helix 6
6
B
195 200Right-handed alpha
Helix 7
7
B
218 240Right-handed alpha
Helix 8
8
B
253 263Right-handed alpha
Helix 9
9
B
267 276Right-handed alpha
Helix 10
10
B
277 284Right-handed alpha
Helix 11
11
B
370 372Right-handed 310
Helix 12
12
B
376 384Right-handed 310
Helix 13
13
B
473 478Right-handed 310
Helix 14
14
B
479 483Right-handed 310
Helix 15
15
B
492 512Right-handed alpha
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There are 6 sheets in PDB entry 4MMV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
358 361first strand
Strand 2
B
364 368anti-parallel
Strand 3
A
38 49parallel
Strand 4
B
308 318anti-parallel
Strand 5
B
340 345anti-parallel
Strand 6
B
348 352anti-parallel
Strand 7
B
373 375anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
358 361first strand
Strand 2
B
364 368anti-parallel
Strand 3
A
38 49parallel
Strand 4
A
29 33anti-parallel
Strand 5
B
465 469parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
178 180first strand
Strand 2
B
186 194anti-parallel
Strand 3
A
51 60parallel
Strand 4
B
296 305anti-parallel
Strand 5
B
286 292anti-parallel
Strand 6
B
243 244anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
321 322first strand
Strand 2
B
333 336anti-parallel
Strand 3
B
394 398anti-parallel
Strand 4
B
487 491anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
404 407first strand
Strand 2
B
411 416anti-parallel
Strand 3
B
438 443anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
430 434first strand
Strand 2
B
422 426anti-parallel
Strand 3
B
449 452anti-parallel
Strand 4
B
455 458anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il