Analysis of interatomic Contacts of Structural Units in PDB entry:
4MNC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4MNC entry

There is 1 chain in PDB entry 4MNC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 28GLN 332
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 4MNC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
42 59Right-handed alpha
Helix 2
2
A
75 77Right-handed 310
Helix 3
3
A
78 85Right-handed alpha
Helix 4
4
A
94 98Right-handed 310
Helix 5
5
A
102 111Right-handed 310
Helix 6
6
A
114 122Right-handed alpha
Helix 7
7
A
122 136Right-handed alpha
Helix 8
8
A
170 172Right-handed 310
Helix 9
9
A
173 180Right-handed alpha
Helix 10
10
A
188 190Right-handed 310
Helix 11
11
A
191 198Right-handed alpha
Helix 12
12
A
215 220Right-handed 310
Helix 13
13
A
239 245Right-handed alpha
Helix 14
14
A
246 263Right-handed alpha
Helix 15
15
A
265 281Right-handed alpha
Helix 16
16
A
289 312Right-handed alpha
Helix 17
17
A
312 324Right-handed alpha
Helix 18
18
A
325 329Right-handed 310
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There are 2 sheets in PDB entry 4MNC. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 69first strand
Strand 2
A
30 36parallel
Strand 3
A
90 93parallel
Strand 4
A
233 238anti-parallel
Strand 5
A
137 144anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 186first strand
Strand 2
A
166 169parallel
Strand 3
A
203 207parallel
Strand 4
A
149 153anti-parallel
Strand 5
A
222 224anti-parallel
Strand 6
A
284 286parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il