Analysis of interatomic Contacts of Structural Units in PDB entry:
4MND


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4MND entry

There is 1 chain in PDB entry 4MND (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 72SER 489
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 4MND. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
90 94Right-handed 310
Helix 2
2
A
100 110Right-handed alpha
Helix 3
3
A
123 132Right-handed alpha
Helix 4
4
A
133 135Right-handed 310
Helix 5
5
A
145 148Right-handed 310
Helix 6
6
A
149 156Right-handed alpha
Helix 7
7
A
157 161Right-handed 310
Helix 8
8
A
175 181Right-handed alpha
Helix 9
9
A
235 241Right-handed alpha
Helix 10
10
A
242 244Right-handed 310
Helix 11
11
A
250 258Right-handed alpha
Helix 12
12
A
275 289Right-handed alpha
Helix 13
13
A
297 303Right-handed alpha
Helix 14
14
A
303 316Right-handed alpha
Helix 15
15
A
320 338Right-handed alpha
Helix 16
16
A
339 341Right-handed 310
Helix 17
17
A
342 357Right-handed alpha
Helix 18
18
A
358 367Right-handed alpha
Helix 19
19
A
371 397Right-handed alpha
Helix 20
20
A
400 426Right-handed alpha
Helix 21
21
A
442 458Right-handed alpha
Helix 22
22
A
461 488Right-handed alpha
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There are 3 sheets in PDB entry 4MND. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 142first strand
Strand 2
A
113 120parallel
Strand 3
A
73 79parallel
Strand 4
A
164 169parallel
Strand 5
A
224 233anti-parallel
Strand 6
A
204 208anti-parallel
Strand 7
A
211 216anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 142first strand
Strand 2
A
113 120parallel
Strand 3
A
73 79parallel
Strand 4
A
164 169parallel
Strand 5
A
224 233anti-parallel
Strand 6
A
187 191anti-parallel
Strand 7
A
262 264parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 174first strand
Strand 2
A
270 272anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il