Analysis of interatomic Contacts of Structural Units in PDB entry:
4MNP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4MNP entry

There is 1 chain in PDB entry 4MNP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3LEU 307
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 4MNP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 33Right-handed alpha
Helix 2
2
A
50 60Right-handed alpha
Helix 3
3
A
69 76Right-handed 310
Helix 4
4
A
77 85Right-handed 310
Helix 5
5
A
91 99Right-handed alpha
Helix 6
6
A
101 116Right-handed alpha
Helix 7
7
A
138 143Right-handed 310
Helix 8
8
A
152 161Right-handed alpha
Helix 9
9
A
170 172Right-handed 310
Helix 10
10
A
173 180Right-handed alpha
Helix 11
11
A
190 196Right-handed alpha
Helix 12
12
A
197 202Right-handed 310
Helix 13
13
A
221 227Right-handed alpha
Helix 14
14
A
228 254Right-handed alpha
Helix 15
15
A
256 264Right-handed alpha
Helix 16
16
A
273 280Right-handed alpha
Helix 17
17
A
280 292Right-handed alpha
Helix 18
18
A
292 304Right-handed alpha
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There are 3 sheets in PDB entry 4MNP. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 42first strand
Strand 2
A
4 9parallel
Strand 3
A
65 68parallel
Strand 4
A
212 220anti-parallel
Strand 5
A
117 132anti-parallel
Strand 6
A
187 189anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 42first strand
Strand 2
A
4 9parallel
Strand 3
A
65 68parallel
Strand 4
A
212 220anti-parallel
Strand 5
A
117 132anti-parallel
Strand 6
A
204 206anti-parallel
Strand 7
A
267 269parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 149first strand
Strand 2
A
165 168parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il