Analysis of interatomic Contacts of Structural Units in PDB entry:
4MNR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4MNR entry

There is 1 chain in PDB entry 4MNR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 20LEU 454
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 4MNR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
56 61Right-handed alpha
Helix 2
2
A
70 76Right-handed alpha
Helix 3
3
A
76 82Right-handed alpha
Helix 4
4
A
111 123Right-handed alpha
Helix 5
5
A
149 151Right-handed 310
Helix 6
6
A
152 163Right-handed alpha
Helix 7
7
A
180 183Right-handed 310
Helix 8
8
A
184 195Right-handed alpha
Helix 9
9
A
220 223Right-handed 310
Helix 10
10
A
230 237Right-handed alpha
Helix 11
11
A
238 261Right-handed alpha
Helix 12
12
A
280 287Right-handed alpha
Helix 13
13
A
287 296Right-handed alpha
Helix 14
14
A
317 330Right-handed alpha
Helix 15
15
A
364 382Right-handed alpha
Helix 16
16
A
384 388Right-handed 310
Helix 17
17
A
434 451Right-handed alpha
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There are 6 sheets in PDB entry 4MNR. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 49first strand
Strand 2
A
34 40anti-parallel
Strand 3
A
27 28anti-parallel
Strand 4
A
105 108parallel
Strand 5
A
340 344anti-parallel
Strand 6
A
350 353anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 64first strand
Strand 2
A
68 69anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 145first strand
Strand 2
A
127 132anti-parallel
Strand 3
A
422 428anti-parallel
Strand 4
A
406 415anti-parallel
Strand 5
A
395 403anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
203 206first strand
Strand 2
A
226 229anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 212first strand
Strand 2
A
215 218anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
333 335first strand
Strand 2
A
358 361anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il