Analysis of interatomic Contacts of Structural Units in PDB entry:
4MPB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4MPB entry

There are 4 chains in PDB entry 4MPB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR -5VAL 288
A
 SER 290LYS 496
B
 TYR -5VAL 288
B
 SER 290LYS 496
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 4MPB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
-5 4Right-handed alpha
Helix 2
2
A
5 7Right-handed 310
Helix 3
3
A
44 62Right-handed alpha
Helix 4
4
A
68 86Right-handed alpha
Helix 5
5
A
86 99Right-handed alpha
Helix 6
6
A
101 123Right-handed alpha
Helix 7
7
A
158 174Right-handed alpha
Helix 8
8
A
186 200Right-handed alpha
Helix 9
9
A
215 223Right-handed alpha
Helix 10
10
A
234 247Right-handed alpha
Helix 11
11
A
269 283Right-handed alpha
Helix 12
12
A
284 287Right-handed 310
Helix 13
13
A
299 314Right-handed alpha
Helix 14
14
A
333 350Right-handed alpha
Helix 15
15
A
363 367Right-handed 310
Helix 16
16
A
384 389Right-handed alpha
Helix 17
17
A
403 412Right-handed alpha
Helix 18
18
A
426 437Right-handed alpha
Helix 19
19
A
459 461Right-handed 310
Helix 20
20
A
468 475Right-handed alpha
Helix 21
21
B
-2 5Right-handed alpha
Helix 22
22
B
44 62Right-handed alpha
Helix 23
23
B
68 86Right-handed alpha
Helix 24
24
B
86 99Right-handed alpha
Helix 25
25
B
101 123Right-handed alpha
Helix 26
26
B
158 174Right-handed alpha
Helix 27
27
B
186 200Right-handed alpha
Helix 28
28
B
215 223Right-handed alpha
Helix 29
29
B
234 247Right-handed alpha
Helix 30
30
B
269 283Right-handed alpha
Helix 31
31
B
284 287Right-handed 310
Helix 32
32
B
299 314Right-handed alpha
Helix 33
33
B
333 350Right-handed alpha
Helix 34
34
B
363 367Right-handed 310
Helix 35
35
B
384 389Right-handed alpha
Helix 36
36
B
403 412Right-handed alpha
Helix 37
37
B
426 437Right-handed alpha
Helix 38
38
B
459 461Right-handed 310
Helix 39
39
B
468 475Right-handed alpha
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There are 10 sheets in PDB entry 4MPB. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 13first strand
Strand 2
A
16 18anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 29first strand
Strand 2
A
36 41anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 131first strand
Strand 2
A
138 146anti-parallel
Strand 3
A
477 485anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 208first strand
Strand 2
A
176 180parallel
Strand 3
A
149 153parallel
Strand 4
A
228 232parallel
Strand 5
A
251 255parallel
Strand 6
A
463 464anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
353 356first strand
Strand 2
A
375 378anti-parallel
Strand 3
A
395 401parallel
Strand 4
A
294 298parallel
Strand 5
A
261 264parallel
Strand 6
A
419 423parallel
Strand 7
A
441 444parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 13first strand
Strand 2
B
16 18anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 29first strand
Strand 2
B
36 41anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
128 131first strand
Strand 2
B
138 146anti-parallel
Strand 3
B
477 485anti-parallel
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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
206 208first strand
Strand 2
B
176 180parallel
Strand 3
B
149 153parallel
Strand 4
B
228 232parallel
Strand 5
B
251 255parallel
Strand 6
B
463 464anti-parallel
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There are 7 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
353 356first strand
Strand 2
B
375 378anti-parallel
Strand 3
B
395 401parallel
Strand 4
B
294 298parallel
Strand 5
B
261 264parallel
Strand 6
B
419 423parallel
Strand 7
B
441 444parallel
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