Analysis of interatomic Contacts of Structural Units in PDB entry:
4MS8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4MS8 entry

There are 4 chains in PDB entry 4MS8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 SER 2PHE 200
D
 ALA 3ASP 241
A
 MET 0GLY 175
B
 SER 1LEU 9
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 4MS8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
C
81 85Right-handed 310
Helix 2
2
C
166 169Right-handed 310
Helix 3
3
C
185 189Right-handed 310
Helix 4
4
D
82 86Right-handed 310
Helix 5
5
D
113 117Right-handed 310
Helix 6
6
D
128 136Right-handed alpha
Helix 7
7
D
195 199Right-handed alpha
Helix 8
8
A
49 53Right-handed 310
Helix 9
9
A
56 84Right-handed alpha
Helix 10
10
A
137 151Right-handed alpha
Helix 11
11
A
151 162Right-handed alpha
Helix 12
12
A
162 175Right-handed alpha
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There are 11 sheets in PDB entry 4MS8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 4first strand
Strand 2
C
23 24anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
9 13first strand
Strand 2
C
107 112parallel
Strand 3
C
86 93anti-parallel
Strand 4
C
31 37anti-parallel
Strand 5
C
43 49anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
9 13first strand
Strand 2
C
107 112parallel
Strand 3
C
86 93anti-parallel
Strand 4
C
102 103anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
18 20first strand
Strand 2
C
72 77anti-parallel
Strand 3
C
62 67anti-parallel
Strand 4
C
55 57anti-parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
156 157first strand
Strand 2
C
170 178anti-parallel
Strand 3
C
134 139anti-parallel
Strand 4
C
121 127anti-parallel
Strand 5
D
121 126anti-parallel
Strand 6
D
137 147anti-parallel
Strand 7
D
185 194anti-parallel
Strand 8
D
167 169anti-parallel
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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
161 165first strand
Strand 2
C
170 178anti-parallel
Strand 3
C
134 139anti-parallel
Strand 4
C
121 127anti-parallel
Strand 5
D
121 126anti-parallel
Strand 6
D
137 147anti-parallel
Strand 7
D
185 194anti-parallel
Strand 8
D
174 175anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
4 7first strand
Strand 2
D
19 25anti-parallel
Strand 3
D
73 78anti-parallel
Strand 4
D
65 68anti-parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
10 14first strand
Strand 2
D
106 111parallel
Strand 3
D
87 96anti-parallel
Strand 4
D
31 38anti-parallel
Strand 5
D
42 49anti-parallel
Strand 6
D
56 57anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
10 14first strand
Strand 2
D
106 111parallel
Strand 3
D
87 96anti-parallel
Strand 4
D
99 102anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
161 163first strand
Strand 2
D
152 158anti-parallel
Strand 3
D
204 211anti-parallel
Strand 4
D
230 237anti-parallel
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There are 8 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 47first strand
Strand 2
A
31 37anti-parallel
Strand 3
A
21 28anti-parallel
Strand 4
A
3 12anti-parallel
Strand 5
A
94 103anti-parallel
Strand 6
A
109 118anti-parallel
Strand 7
A
121 126anti-parallel
Strand 8
A
133 135anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il